Rattus norvegicus (rat): 25681
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Entry
25681 CDS
T01003
Symbol
Col10a1
Name
(RefSeq) collagen alpha-1(X) chain precursor
KO
K19479
collagen type X alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
25681 (Col10a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
25681
NCBI-ProteinID:
NP_037272
RGD:
2371
Ensembl:
ENSRNOG00000051399
UniProt:
A0A0G2K7A5
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Position
20:39737536..39744518
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AA seq
680 aa
AA seq
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MLPQIPFLLLVSLTLVHGTFYAERYQTPTGVKSALASPRTQYFIPYPIKGKEISVRGEQG
IPGPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGISATGKPGLPGKPGERGPH
GHKGDIGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGLTGAPGSRGFPGEKGAPGAPG
VNGQKGETGYGTPGRPGERGLPGPQGPVGPPGSPGVGRRGENGFPGQPGIKGDRGFPGEA
GPPGPPGPQGPPGKQGREGIGKPGATGSPGRPGIPGEKGHPGAPGIAGPPGAPGFGKQGL
PGLRGQRGPAGLPGAPGAKGEQGPAGHPGEPGLTGSPGNMGPQGPKGIPGNHGIPGTKGE
TGLVGPAGPPGARGARGPPGLDGKTGYPGDPGLNGPKGNPGLPGPKGDPGVGGAPGLRGL
VGPTGPKGVPGHNGEAGPRGEPGIPGTRGPIGPPGIPGFPGSKGDPGKPGAPGPAGIVTK
GLNGPAGPPGRPGPRGHTGEPGLPGPPGPPGPPGPPSQAVIPDGFTKSGQRPRLSGMPLV
SANQGVTGMPVSAFTVILSKAYPAVGAPIPFDEILYNRQQHYDPRSGIFTCKIPGIYYFS
YHIHVKGTHVWVGLYKNGTPTMYTYDEYSKGYLDQASGSAIMELTENDQVWLQLPNAESN
GLYSSEYVHSSFSGFLVAPI
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgctgccacaaataccctttctgctgctagtgtccttgacgctggttcatggaacgttt
tatgctgagcggtaccaaactcccacaggtgtgaagagcgcacttgccagccccaggaca
caatacttcatcccataccctataaagggtaaagagatttcagtaagaggagaacaaggc
attcctggtccaccaggcccagctggacctcgaggacacccaggtccctcaggacctcca
ggaaagccaggctatggaagtcctggactccaaggagagccagggttgccaggaccacca
ggaatatcagccactgggaagccgggcctgccaggcaaaccaggggagagaggaccacat
ggacacaaaggagatattggcccagctggcttaccagggcctcggggccctccaggccca
cccggaatccctggtccagctggaatttctgtgccaggaaaacccggacagcagggactt
acaggtgctccaggatctaggggctttcctggagaaaagggggcaccaggagctcctggt
gtgaatggacagaaaggggaaaccggatatggcactcctggccgtccaggtgagaggggt
cttccaggccctcagggtcctgtaggcccccctggctcccctggagtgggaagaagaggt
gaaaatggctttccgggacagcctggcataaaaggtgaccggggtttcccaggagaagcg
ggaccacccggtccaccaggtccacaaggtcctcctgggaagcaaggacgagaaggtatt
gggaagccaggagccactggatcccccggtcggccaggtatcccaggagaaaaaggccac
ccaggggctccaggaatagctgggcctccaggagctcctggctttggaaaacaaggcttg
ccaggtttgaggggacaaaggggacctgctggtcttcctggggctccaggtgccaaaggg
gaacaagggccagcaggtcatcctggtgaaccaggtctgactggatcccctgggaatatg
ggaccccaaggacctaaaggaatcccagggaatcatggtatcccaggcactaaaggtgag
acaggtctggtggggcctgcagggccacccggggctagaggagcaaggggcccccctggg
ttagatggaaaaacaggatatcctggggatccaggtctcaatggtcctaagggtaaccca
gggttaccaggaccaaaaggtgatcctggagtgggaggagcccctggtcttcgaggtctt
gttggccctacaggacctaaaggagtgcctggacacaatggtgaggcaggtccaagaggt
gaacctggaataccaggtaccaggggccctattggaccaccaggtatcccaggattccct
ggatctaagggtgacccaggaaagccaggtgctccgggcccagctggaatagtaactaag
ggcctcaatgggcccgctggtcctccagggcgtcctggtccaagaggtcatactggagag
cctggtctcccaggtcctccaggacccccaggacctccaggacctcccagccaagcagtc
atacctgatggcttcacaaagagcggacagagacccaggctttctgggatgcctcttgtc
agtgctaaccagggggtaacaggcatgccggtgtccgcttttactgtgattctttccaaa
gcttacccagcggtaggtgctcccatcccatttgatgagattctgtacaacaggcagcag
cactatgacccaagatctggaatctttacctgtaagatcccaggcatatactatttttcc
tatcacatccatgtgaaggggactcacgtttgggtaggcctgtataagaatggcacgccc
acaatgtacacgtatgatgagtacagcaaaggctacttggatcaggcttcagggagcgcg
atcatggagctcacggaaaatgaccaggtgtggctccagttgcccaatgcggaatcgaac
ggcctctactcctctgagtatgtccactcgtccttctcaggattcctagtggctcccata
tga
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