Rattus norvegicus (rat): 25683
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Entry
25683 CDS
T01003
Symbol
Col12a1
Name
(RefSeq) collagen alpha-1(XII) chain precursor
KO
K08132
collagen type XII alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
25683 (Col12a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rno00535
]
25683 (Col12a1)
Proteoglycans [BR:
rno00535
]
Extracellular matrix (ECM) proteoglycans
Others
25683 (Col12a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
FN3_DSCAM-DSCAML_C
VWA_2
Fn3_ROS1
Fn3_PBP1
Pur_ac_phosph_N
Collagen
Interfer-bind
Fn3_VIN3
DUF4998
GldM_4th
CBM_4_9
Copine
Motif
Other DBs
NCBI-GeneID:
25683
NCBI-ProteinID:
NP_037274
RGD:
2374
Ensembl:
ENSRNOG00000058470
UniProt:
A0A0G2KAJ7
LinkDB
All DBs
Position
8:complement(89427834..89545886)
Genome browser
AA seq
3064 aa
AA seq
DB search
MQTGLPRALAALGVALLLSSIEAEVDPPSDLNFKIIDENTVHMSWERPADPIVGYRITVD
STTDGPTKEFTLAASTTETLLSNLIPETQYVVTITSYDEVEESVPVIGQLTIETGDPAKP
GEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIVALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYRREDLLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGSRAG
FPKVAIIITDGKSQDEVEIPARELRNIGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVIEPPSNLVVTDLSSKFIRLRWDPSPSA
VTGYKILLTPMAAGSRHHALSVGPQTTTLNVRDLSADTEYQISVFAMKGLTSSEPVSVME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLAKSFEISPNRVQIS
LVQYSRDPHTEFTLKEFNRVEDIIKAINNFPYRGGSTNTGKAMTYVREKIFVPNKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLRFTQVTANSFKAEWSPAGDNVF
SYHITYKDTTGDDEVTVVEPASSTSVVLSNLKPETLYLVNVTAEYEDGFSVPVVGEETTA
EVKGAPRNLKVTDETTDSFKITWSQAPGRVLRYRIMYRPVSGGESKEVSTPANQRRKTLE
NLTPDTKYEISVIAEYSSGPGSPLTGSAATEEVRGNPRDLRVSDATTSTLKLTWSGAPGK
VKQYLVTYTPAAGGETQEVTVRGDTTTTVLRNLKEGTQYDLSVTALYASGAGEALSGKGT
TLEERGSPQNLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDIEAGEKTLPGDAIHT
MIENLQPETKYKISVFATYSSGEGEPVTGDATTELSQDSKILKVDEETEHTMRVTWKAAP
GKVINYRVVYRPQGGGRQMVAKVPPTVTSTVLKRLQPQTTYDITVLPMYKTGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVLGPYDN
TVVLEELRAGTTYRVNVFGMFDGGESLPLVGQEMTTLSDTTVTPFLSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFEIGPKRVQIALAQYSGDPRTEWHLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQSFKTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDIHAYNVADFESLSKIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRLETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDIGPTTMHVQWQPVGGA
TGYTVSYQPTRSPEGTKPKEMRVGPTVNDVQLTGLLPNTEYEVTVQAVLHDLTSEPAKAR
EATLPLPRPQDVKIRDVTHSTMNVIWEPVLGKVRKYTVRYKTPEEEFKEVEVDRSRTSTT
LKDLSSQTQYTVSVSAVYDEGTSPPATAHETTRPVPAPTNLQFTEVTPESFRGTWDHGAS
DVSLYRITWAPVGNPDKLETILNGDENTLLFENLDPNTLYDVSITAIYPDESESEDLSGS
ERTLRLIPLTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQT
TTVGGRQNSVVLQKLKPDSPYTITVSSQYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTS
TLSVRWDHAEGNPRQYKLFYAPAGGPEELVPIPGNTNYAILRNLQPDTPYTVTVVPVYAE
GDGGRTSDTGRTLVRGLARNVQVYNPTPNSLDVRWDSAPGPVQQYRIVYSPVAGTRPSES
IVVPGNTRTVHLERLIPDTPYSVNIVALYSDGEGNPSPGQGRTLPRSGPRNLRVFGETTN
SLSVAWDHADGPVQQYRIIYSPIVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAIY
EDGDGGHLTGNGRTVGLLPPQNMHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPM
EAFVGEVTSYTLHNLNPSTTYDVSVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQVGWDT
FCVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPEAEYGVTVFVQTPNL
EGPGVPIKEQTTVKPTEAPTEPPTPSPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNF
NKVVKFIFNTVGAFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGG
NTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAAFIIQQSGFSVFVVG
VADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLVYLDGYTSP
GFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRLQKNAFINQPTAELHPNGLPPSYTI
ILLFRLLPETPSDPFAIWQITDRDYRPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDADE
AKTLFYGSFHKVHIVVTSKSVKIYIDCYEIVEKDIKEAGNITTDGYEILGKLLKGERKSA
TFQIQSFDIICSPVWTSRDRCCDIPSRRDEAKCPALPNACTCTQDSVGPPGPPGPAGGPG
AKGPRGERGINGAVGPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGL
PGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGTPGSPGVTGPSGKPGKPGD
HGRPGQSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMSRFNQMLNQIPNDYHSNRN
QPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPQGERGLPGEKGERGIGSQGPRGP
PGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGY
PGSG
NT seq
9195 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccgggcttccccgagcgctggccgccctgggcgtggccctactcctgtcttct
attgaggcagaagttgacccaccttccgacttgaattttaaaattatagatgaaaatact
gtccatatgtcatgggagagaccagctgatccaattgtgggttacagaataacagtggac
tctacaacagatgggcctactaaagaatttacccttgcagctagtaccactgaaacccta
ttatcaaaccttattcctgaaacacagtacgtggtcaccatcacttcctacgatgaagta
gaagaaagtgtgccggttataggccaactaacaattgaaacaggtgatccagcaaaacca
ggggagaagaaacctggaaaaacagagatacaaaagtgctctgtcagcgcctggaccgac
ttagtgtttcttgtggatggctcctggagtgtgggaagaaataatttcaagtacatttta
gacttcattgttgctcttgtgtctgcctttgacattggggaggagaagacaagggtggga
gttgttcagtacagctcagacaccaggactgaatttaacttaaatcagtattaccgaaga
gaagacctgcttgctgcaattaaaaaaataccatacaaaggtggcaacacaatgacaggg
gatgccattgactacttagtcaaaaacactttcactgagtctgctggctcaagagctggc
tttcctaaagtggcgatcattatcacggatggcaagtctcaggatgaagtagaaattcca
gcacgggaacttcggaatattggagttgaggttttctctctgggcattaaagctgcagat
gcaaaagaactcaaacaaattgcatccacaccttccctgaaccacgtgttcaatgtggcc
aattttgatgcaatcgtggacattcagaatgagataatctcccaggtgtgttcaggagtt
gatgagcaacttggtgagctggtcagtggagaagaagtcatcgagcctccttcaaatctg
gtagtcacagatctctcatcaaaattcattaggctgagatgggatccgtctcccagcgct
gtgactggctataagatcctcctcacaccaatggctgccgggagccgccatcacgctttg
agtgtggggccccagacgaccacgctcaatgttcgtgacctttcagctgacacagaatac
cagatcagcgtttttgccatgaaggggctaacatccagtgagcctgtttcagtcatggag
aagacacagccaatgaaagttcaagtagaatgttcacgtggtgtggatataaaagccgac
atcgtgtttttggttgatggttcctacagcatcggcattgcaaactttgttaaagttaga
gcctttttggaagttcttgcaaaaagttttgagatttctccaaacagggtgcagataagc
cttgtccagtacagcagagaccctcacactgaatttacattgaaggagtttaacagagtt
gaagacataatcaaagcaataaataacttcccgtacaggggaggatccacaaacacaggc
aaagcaatgacttacgtcagagagaaaatatttgtgcctaacaaaggctccagaagcaac
gtaccaaaggtgatgattctcatcacagatgggaagtcgtcagatgctttcagggaccct
gctataaaactcaggaactcggacgtggagatcttcgcagttggtgtaaaggatgctgtg
cgctcagaactggaagccattgcctctcctcccgctgagacacatgtgttcacagtggag
gacttcgatgcctttcagaggatatcgtttgaactcacacagtctatctgtcttagaatt
gagcaagagttggcagctataaagaagaaagcttatgtgccgccaaaggatctgagattt
actcaggtaactgctaatagtttcaaagctgaatggtctcctgctggagacaacgtcttc
tcgtatcacatcacgtacaaggacactactggtgacgatgaggtcacagtggtggagcca
gcctccagcaccagtgttgttctcagcaacctgaaaccagagaccctgtacttggtgaat
gtgacggcagagtatgaggatggcttcagcgtccctgtagttggggaggagaccacggct
gaagtaaaaggagcaccacgaaacctgaaggtgactgatgagacgacggacagttttaaa
attacctggtctcaagctccagggagagtcttaaggtaccgaattatgtacagaccagtt
tctggtggagaaagtaaagaagtcagtactccagccaaccagaggaggaaaacactggag
aacctgacgccagacacaaagtatgaaatatctgtaattgctgaatattcatccggacct
ggctctccactgacaggaagtgcagccactgaagaagttagagggaatccaagagactta
agagtttctgatgccacgacatcaacgctgaagttgacttggagtggggccccaggaaaa
gtgaagcagtatcttgtcacatacaccccagcagcaggaggtgaaactcaggaggtcact
gtgagaggggatacaaccaccacggtgttgaggaacttgaaggaagggacacagtacgac
ttatctgtgacagcactgtatgcgtctggggctggtgaggccctttctggaaaagggaca
acacttgaagaacgtggttcacctcaaaatctagttaccaaagacatcacagacacatca
atcggggcctattggacatctgctccagggatggttcgagggtacagggtctcatggaag
tcgctttatgacgatattgaggccggagagaaaactcttcctggagatgcaattcacact
atgattgagaatctgcagccagagaccaagtacaaaatttcagtttttgcaacttacagc
agtggagaaggagagccggtgactggagatgccacaactgaattatctcaagactccaaa
atcttaaaagtggatgaagaaacagaacacacaatgagagttacctggaaagcagcgccg
gggaaagtcatcaactaccgcgttgtgtatcgccctcaagggggtgggagacagatggtt
gctaaggttccacccacggtcacttcaacagtgctaaagaggcttcaaccccagaccaca
tatgacatcacagttctcccaatgtataagacaggagaaggaaagcttagacaaggatca
ggaacaacagcttctcgatttaaatcgccgagaaacctcaaaacttctgacccaacaatg
tcaagtttccgagtgacttgggagcctgcccctggggaagtgaaaggttacaaagtcacc
tttcaccctacaggtgacgacagaagacttggggagttggtccttggaccatatgacaac
acagttgtcttggaggagcttagggcaggcactacatatagagtcaatgtttttgggatg
ttcgatggaggagaaagtttaccacttgttgggcaggaaatgacaaccctttctgacaca
actgtgacaccatttctatcttccgggatggaatgtctcaccagagctgaagcagacatt
gtgttgctggtggatgggtcatggagcattggccgcgcaaattttagaactgtgcgaagc
ttcatctctcgtatcgtggaagtctttgaaatcggccccaagagagtacaaattgctctc
gctcagtacagtggagaccccagaacagagtggcacctaaacgctcatagagacaagaag
agtttgttacaggctgtggcgaacttgccgtataagggaggaaacaccctcacaggcatg
gctttgaatttcattcgccaacagagcttcaagactcaagctggcatgcggcctcgtgct
cgcaaaattggagttctcattaccgatggaaaatcacaggatgatgtggaggctccatcc
aagaagctcaaggatgaaggtgtagagctgtttgctatcggtattaagaatgctgacgaa
gttgagttaaagatgattgccactgatccagatgacattcacgcatacaatgtggcagat
tttgagtcattgtccaagattgtggatgacctcaccatcaacttgtgtaacagtgtcaag
ggccctggtgacttggaagcaccatctaacttagttatttcagagagaactcatcgttct
tttagagtgagctggacacccccttctgacagtgtggacagatacaaggtggaatactat
cctgtctctggagggaaacgccaggagttttacgtgagtcgactagaaactagcacagtg
ttgaaggatctgaagcccgagactgagtatgtggtgaacgtgtattctgtggttgaagat
gagtacagtgagcctctgaagggcacagagaaaaccttgccagtccctgtagttagcctg
aatatttatgatattggccccaccactatgcatgtgcaatggcagcctgtgggaggagct
actggctacactgtatcataccaacctacaagatctccagaaggaacaaagcccaaagag
atgcgtgtggggcccacagtgaatgatgtgcagctgaccggcctccttcctaacacagag
tatgaggtcaccgtccaggcagtcttgcatgacctcactagtgaacctgccaaagctcgg
gaagccacattgcccttacccagaccccaggatgtgaaaatcagagatgtgacccacagt
accatgaatgtcatctgggagcctgtgcttggaaaagttcgcaaatacactgttagatat
aaaactccagaagaggagttcaaagaggtggaggtggacagatcaaggaccagcactacc
ctcaaagacctctcctctcaaacccagtacacagtgagcgtttccgcagtgtatgatgag
ggcacatctcccccggcgactgctcatgagacaacccggcctgttccagccccaaccaac
ctacagtttactgaagtaactccggagagttttaggggaacctgggatcacggtgcttca
gatgtgtctctctacagaataacctgggcacctgtcggaaacccagataagctggagacc
atcttaaatggagatgaaaataccttgctgtttgaaaatctggaccccaacactctgtat
gatgtctccatcactgccatttatcccgatgagtctgaaagcgaggacctgagtggcagc
gagcgcacattgcgtctgatacccttaacgacacaagctccaaaaagtggtccacggaac
ctgcaggtgtacaatgccacatctaacagtttgactgttaagtgggaccctgctagtggt
cgtgtgcaaaaatacagaatcacctatcagccttcaactggagaaggcaatgagcaaacg
accacagtaggaggacggcagaacagcgtggtcctgcagaaactgaagcccgacagtccg
tacaccatcaccgtgtcatcccagtatcctgatggtgaaggcggccggatgactggaagg
ggcaaaactaaacctctgaataccgtgaggaatttgagagtgtatgacccatctaccagc
actttgagtgttcgctgggaccatgcagaaggcaatcctcgccagtacaaactcttctat
gccccagccggtggtccagaagaactggtaccaatccctgggaataccaactatgccatt
cttaggaacctgcagccagatactccatacactgtcacagtggttcctgtctatgcagaa
ggtgacggcgggcgcacatcagatactggaaggacactggtgagaggactggcgagaaat
gtccaagtgtataaccctacgcccaacagcctcgatgtccgctgggactctgccccaggg
ccagtgcagcagtaccgcattgtgtactccccagtggctgggacaagaccctcagaatct
attgtggtgccagggaatacccgcacggtgcatctggagaggttgattcctgacacaccc
tactctgtgaacatcgtggctctctactcagatggagaggggaatcccagccctggccag
ggccgaacactgccacggagtggaccaagaaatctacgagtctttggggagacgaccaac
agcctctctgtagcctgggaccatgctgacgggccagttcagcaatacaggatcatctat
tctcctatcgtgggcgatccaattgatgaatataccacagttccaggcaggagaaacaat
gtaatactgcagcccctgcaacctgacactccatataaaattactgtcattgccatttat
gaggatggagatggtggccatctaactggaaacgggaggactgtgggtctgcttccgcct
cagaacatgcacatctctgacgaatggtacacaaggttccgagtgtcctgggacccttca
ccctcaccagtccttggatataaaattgtgtacaagccagtgggttccaatgagcccatg
gaagcctttgttggagaagtgacgtcatacactttacacaacctcaatcccagcactacc
tatgatgtcagtgtttatgcacagtatgactctggactcagcgttcccctcacagatcaa
ggcaccacgttgtacttaaatgtgacagatctgaaaacttaccaggttggatgggacacc
ttctgtgtcaaatggtcacctcaccgggcagcgacctcttacaggctaaagctgagtcct
gccgatggaaccaggggacaagaaataacagtgagaggatcagagaccagtcactgcttc
actggcctctccccggaggctgagtatggcgttactgtttttgtgcagacaccaaatctc
gaggggccgggtgtccccatcaaagaacagacgactgtgaaaccaacagaggctcccaca
gaaccgcccacgccttcacctcctcccactatcccacctgcccgtgatgtatgcaaaggg
gccaaggcagatattgtgttcctgacggatgcctcttggagtattggagatgacaatttt
aacaaagttgtaaaatttatttttaatactgtgggggcctttgatgaaatcagccctgct
gggattcaggtttcttttgtgcagtacagtgatgaggtcaagtctgaattcaagctgaac
acatacaacgataaggctctagcccttggagccctccagaacattcggtacagaggagga
aacacaagaacaggcaaggccctcacgtttatcaaggagaaggtcttgacctgggaaagt
ggcatgaggaagaatgtcccgaaggtgctagttgtggtcacagatggccggtcacaggat
gaggtgaagaaggcagcctttatcatccagcagtcagggttcagtgtattcgttgttggt
gtggctgatgtggactacaatgagctcgccaacattgccagcaagcccagtgagaggcac
gtgttcattgtggacgactttgaatcttttgagaagatcgaggacaatcttatcacattt
gtttgtgaaactgccacttcaagttgtcctctcgtctatctggatggctacacatcacca
ggctttaagatgcttgaagcttacaacctgacagaaaagaactttgcttctgtccaagga
gtctctttggaatcagggtctttccccagctattcagcctacaggcttcagaagaatgcc
tttatcaatcagcccacagcagaactccatccgaatggactccccccttcatatacgatt
atattattgtttagacttctcccagaaactcctagtgacccctttgcaatttggcaaatt
acagacagagactacagaccacaagttggagtgattgcagatccttctagcaagacactg
tctttctttaataaggatacaagaggcgaggtacagactgttacatttgatgcagatgaa
gcgaagaccttgttttatggaagctttcataaggtccatattgtagtgacctcaaagagt
gttaagatttatattgactgctatgaaattgtagaaaaagacatcaaagaagctggaaat
ataacaactgatggctatgaaattcttggaaaacttcttaaaggagagaggaaatcagcc
acattccaaatccagagctttgacattatctgcagcccagtgtggaccagtagagacaga
tgctgtgatattccctctcggagagatgaagcaaaatgccccgcccttccgaatgcttgc
acatgcacacaggacagcgttggccctccaggtcctccaggccctgcgggaggacctggt
gccaaaggtcccagaggtgaaagaggcatcaatggggcagttgggcccccaggtcctcgt
ggagatactgggcctccaggacctcagggtcctccaggccctcagggacccaatggactc
tccattccaggagaacagggtcgccagggaatgaaaggtgatgcaggagagccagggctt
ccaggccggacaggaaccccaggattacctggcccgccaggaccaatggggccaccagga
gacagaggtttcactggaaaagatggtgcaatgggaccgagaggcccacctgggccaccg
ggaaccccaggctctccaggagtcacagggccaagtgggaaaccgggaaaacctggagat
catggccgacctggtcaatctgggttaaaaggagaaaaaggtgataggggagacattgct
tcccagaacatgatgcgagctgttgcaagacaagtgtgtgaacaactgatcagtggccag
atgagcagattcaaccagatgctgaatcagattccaaacgattaccactcaaatcgaaac
cagcctggcccaccaggacctccagggccccctggcagtgctggagccagaggagaacca
gggccggggggacgaccaggattccctggcacgcctgggatgcaaggacctcagggcgaa
cgaggtttgcctggagagaaaggtgaaaggggtattgggtcgcaaggaccccgaggacct
ccagggcccccaggtccacaaggtgaatccagaacaggtccaccagggtctacaggttca
agaggccctcctggtccccctggtcgtccaggaaactcaggtatccgaggacccccaggt
cctcctggatattgtgattcatcccagtgtgccagcattccatacaacgggcaaggctat
ccaggttccggctaa
DBGET
integrated database retrieval system
