Rattus norvegicus (rat): 259170
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Entry
259170 CDS
T01003
Symbol
Casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
259170 (Casc3)
03015 mRNA surveillance pathway
259170 (Casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
259170 (Casc3)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
259170 (Casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
259170
NCBI-ProteinID:
NP_671485
RGD:
628766
Ensembl:
ENSRNOG00000009716
UniProt:
Q8K3X0
LinkDB
All DBs
Position
10:84264157..84286639
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AA seq
699 aa
AA seq
DB search
MADRRRQRASQDTEDEESGASGSDSGSPARGGGSCSGSAGGGGSGSLPSQRGGRGGGLHL
RRVESGGAKSAEESECESEDGMEGDAVLSDYESAEDSEGEEEYSEEENSKVELKSEANDA
ADSSAKEKGEEKPESKGTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIP
RKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYD
IRSAHNPDDIKPRRIRKPRFGSPPQRDPNWIGDRSSKSHRHQGPGGNLPPRTFINRNAAG
TGRMSTSRNYSRSGGFKEGRTSFRPVEVGGQHGARSGETLKHEANYRSRRLEQTPMRDPS
PEPDAPLLGSPEKEEVASETPAAVPDITPPAPDRPIEKKSYSRARRTRTKVGDAVKAAEE
VPPPSEGLTSAATVPESTPPAAKTGNWEAPVDSTTGGLEQDVAQLNIAEQNWSPGQPSFL
QPRELRGMPNHIHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRPVPEPPAPPVHISIME
GHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQSPAPLPNPGLYPPPV
SMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGV
TYYNPAQQQVQPKPSPPRRTPQPVSIKPPPSEVVSRGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcccaggacactgaggacgaagaatctggtgct
tcgggttccgacagcggctctcccgcacggggcggcggcagctgcagcgggagcgccgga
ggcggcggcagtggctcgctgccttctcagcgcggcggccgcggcgggggccttcatctg
cgacgggtggagagcgggggcgccaagagcgcagaggagtctgagtgtgagagtgaagat
ggcatggaaggagatgctgttctctccgattatgaaagtgcagaagattcagaaggtgaa
gaagaatacagtgaagaggagaattccaaggtagagctgaaatcagaagctaatgatgct
gctgattcctctgcaaaagagaagggagaagaaaagccggaatctaaaggcaccgtgacg
ggggagaggcaaagtggggatggacaggagagcacagagcctgtggagaacaaagtgggt
aaaaaaggccctaagcatttggatgatgatgaagatcggaaaaacccagcgtatattccc
aggaaagggctcttctttgagcatgatcttcgaggacagactcaggaagaggaagtccga
cccaagggacggcagcgaaaactatggaaagatgagggtcgctgggagcatgataagttc
cgtgaggatgaacaggctccaaaatctcgacaggagctaattgcactttatggctatgac
attcggtctgctcataatcctgatgacatcaaaccccgaagaatccggaaacctcgattt
ggaagtcccccacaaagagatccaaactggattggtgaccgatcaagcaaatcccatcgc
caccagggtcctgggggcaacctaccacctaggacatttattaacaggaatgcagcaggt
actggccgcatgtctacatccaggaattattctcgatctgggggcttcaaggaaggtcgt
actagttttaggcctgtggaggttggtgggcagcatggtgcccggtctggtgagactctt
aagcatgaagctaattaccggtcacggcgtctggagcagactcctatgagggatccatct
ccagaaccagatgctccattgcttggaagtcctgagaaagaagaggtggcctcagagaca
ccagctgctgtacctgacatcacaccgccagctcctgacagacctattgagaagaaatcc
tattcccgggcaagaaggacccggaccaaagttggggatgcagtcaaagcagctgaagag
gttcctcctccatctgaagggctcacttcagcagccacggtcccagaatctactcctcca
gctgctaagactgggaactgggaggctccagtggattctaccacaggtggacttgagcaa
gatgtggcacagctaaatatagcagaacaaaattggagtccaggacagccttcattcctg
cagccacgggaacttcgaggtatgcctaaccacatccatatgggagcaggacctccacct
cagtttaaccggatggaagaaatgggtgtgcagagtggtcgagctaagcgttactcttcc
cagcggcagcggcctgtgccagagccccctgctcctcctgtgcatatcagtatcatggag
ggacattactatgatccattgcagttccagggaccaatctatacccatggtgacagccct
gccccactgcccccacagggcatgattgtacagccagaaatgcaccttcctcacccaggt
ttacacccccaccagtcaccagcacctctgcccaatccgggtctctacccaccaccagtg
tccatgtccccaggacagccaccgccccagcagttgcttgctcccacctacttttctgct
ccgggtgtcatgaattttggtaaccctagttacccttatgctccgggagcactgcctcct
cctccacctcctcatctgtatcctaatacacaggctccatcacaggtgtatggaggagtg
acttactataaccctgcccagcagcaggtacagccaaagccctctccaccccggaggact
ccccagccagtctccatcaagccccctccatctgaggttgtaagcagaggttccagttaa
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integrated database retrieval system
