Rattus norvegicus (rat): 287773
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Entry
287773 CDS
T01003
Symbol
Helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
287773 (Helz)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
287773 (Helz)
3'-5' decay
Other 3'-5' decay factors
287773 (Helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
zf-CCCH_4
AAA_22
AAA_7
AAA_16
Bac_DnaA
Mg_chelatase
AAA_5
Motif
Other DBs
NCBI-GeneID:
287773
NCBI-ProteinID:
NP_001099318
RGD:
1307049
Ensembl:
ENSRNOG00000003213
UniProt:
D4ADZ6
LinkDB
All DBs
Position
10:92979039..93144868
Genome browser
AA seq
1964 aa
AA seq
DB search
MEDRRAERSCEQACASLQRQDYDMALQHCTDALLSLGQYSMTDFAGPCPVEIERIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGESAFRAVLCCMQLKGKLQPVSSILAQSLS
GESLNGMVTKDLTRLKTLLAETETATSNAPSGCHVEDLDEGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQSENKQLSGSYMETLI
EKWMSSLSPEKVLSECLEGVQVEHSPDLSVTVNTKKSHQTWTFALTCKPARMLCRVALLY
DAHRPHFSIIAISAGDSTAQVSQEVPENCQEWIGGEMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTARRWEPSSKTIVDFEPNE
TTDWEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSRFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTRVNAVYLLPVP
KEKLVQSQGTKEKVYEATIEEKTKDYVFLRISRECCEELSLRPDCDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLCIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
AQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRAFRLQHSGNSSRQQQSPPKVKSLHHPQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPIPYGLGHHPPV
NLGQPQNQHAEKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQIDLESNPQNRSPE
SRPGVVYSNTKFPRKDNLNPRHINLPLPAPHTQYAIPSRHFHPLPQLPRPPFPISQQHTL
LNQQQNNLPEQPNQMTPQPNQVAPQPNQMAPQPNQMAPQPNQVVQQQNQAPPQAPQPAPQ
LSPAFQAGPTNAFFNNAVAHRPQSPAAEAVGPEQQVPPGLSDGHSPLRAITQPGPILASP
LNNFVDESSPGLPIEEALDRVHGSVALETLRQQQARLQQWSEHHAYLSQGGIPYSHHHHP
HLAHLPQTPISLHQPPVRAEWKVAGRADDETETTFSRFQDLLRELSHRDQGDTGELAEMP
PPQSRLLQYRQVQPRSPPAVPSPPSSTDHSSHFANFNDNSRDIEVANSPAFPQRLPPQLF
GPPYSLQSEHLAPPPLKYLAPEGAWNFANLQQNHLIGPGFPYGLPPLPPRPPQNPFIHIQ
NHQHAVGQEPFHPLPSRAVSSSSLPSLEEYEPRGPGRPLYQRRISSGAAQPCVEEASTPQ
DSLAQGKEPQDHSNPPGFGFPAPESWANTTSSAPYQNIPCNGSSRTSQPRELIVPPKTVK
PPEDQLKPDSGEVSSSFNYSVLQHLGQFPPLMPNKQIAESANSSSQQSPAGSKPAMSYAS
ALRAPPKPRPPPEQAKKGSDPLSLFQELSLGSSPGSNGFYSYFK
NT seq
5895 nt
NT seq
+upstream
nt +downstream
nt
atggaagacagaagagctgaaaggtcatgtgaacaagcgtgcgcgtcactgcagaggcag
gactatgacatggccctccagcattgcacagacgccctgctctctcttggccagtactcc
atgacagacttcgcagggccgtgcccagtggagattgagcgcatcaaaatcgagagtctt
ctgtacagaattgcctcattcttgcagttgaaaaactacgggcaagctgatgaagattgt
aggcatgtgctgggggaaggactggccaagggagagagcgccttccgggcagtgctgtgc
tgcatgcagctgaaggggaagctccagcctgtgtcctccatccttgcccagtcactgtca
ggggagtctctgaatgggatggtaacgaaggatttgacaagactcaagacacttctcgca
gagacagagacagcaacaagtaatgccccctctggctgtcatgtggaagacttagatgaa
gggtcttgtaatggttggcatttccgcccaccgcccagggggatcaccagcagtgaggag
tacaccttgtgtaaaaggtttttagagcaagggatctgtaggtacggtgcccagtgtact
tcagcacattcccaggaagaactagcagaatggcagaagagatatgcctcgcggctgata
aaactgaagcagcagagtgagaacaaacagctctcaggcagctacatggagaccttgata
gaaaagtggatgagctcactgtcccctgagaaagtgcttagcgaatgcctagagggagtc
caggtggagcacagccctgacctgtcagtcaccgtcaacaccaaaaagtcccaccagaca
tggacctttgctctgacctgtaagcctgcaagaatgctgtgtcgggtagccttgctctat
gatgctcatcgtcctcattttagtatcattgccatatctgccggagatagtactgcccag
gtatcacaagaagtccccgagaactgtcaagaatggataggaggagagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggagccagtactcatgcaaagagtaatg
attgacgcagcttctacagaagatcttgagtacctgatgcatgccaagcagcagctggta
accacagccaggcgctgggagccttcctccaagactattgtagactttgaacctaacgag
actactgattgggagaagagccttttgatcagataccaaattcctctctctgctgaccag
ctgtttacacagtccgttttagacaaatccttgaccaagactaactatcagtcacggcta
cacgacctgctttatattgaggagatagcccagtataaagaagtcagcaggttcaacctt
aaggtgcagctgcagatcttagcaagcttcatgctcactggagtttctgggggtgcaaag
tatgctcagaatggacaactttttggtcgttttaaacttactgaaaccctgtctgaagac
actttggctggacgactggtgatgaccagggtcaatgctgtttatttattaccagtccct
aaagagaagctcgtccagtcccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagactatgtatttttaaggatatccagggaatgctgtgaagagctcagt
ctgcggcctgactgtgacacccaggttgagcttcagtttcagttgaaccgattacccctc
tgtgaaatgcattatgcactagacaggattaaggacaatggtgttttgtttccagacatc
agtatgactcccactataccttggagtcccaacagacagtgggatgagcagttggatcct
cgactaaatgcaaagcagaaagaagctgtgctggccatcaccactccgctctgcatccag
ctgccccccgttcttatcattggaccctacgggacgggtaaaaccttcactctggctcag
gccgtcaagcacatactgcagcagcaggagacgagcaggattctcatttgcacccattct
aatagtgctgctgacctctacataaaggattatttacatccctatgtagaagcaggcaat
gcccaggcaagacctctcagggtgtatttccgaaatcgctgggtgaagactgttcacccg
gttgtgcatcagtactgtttgatctcaagcgcacactccacctttcagatgccccagaag
gaagatattcttaaacatcgagtggtggtggtcacactgaacacttcccagtacctctgc
cagctggaccttgaacctgggttcttcacgcacattctgttagatgaagctgcccaggcc
atggagtgtgagaccattatgcctctagccttagcaactaaaaacacacggattgttttg
gctggtgaccatatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtttcattacttgatcgactctacgagcattaccctgccgagtttccatgcagg
atcctcctctgtgagaactatcgctcccatgaagctatcatcaactatacctctgagctc
ttctatgagggtaaactgatggccagtggaaagcagccagcacacaaggacttctaccca
ctgacgttctttacagcacgaggggaggacgtccaagagaagaacagcacggcattctat
aacaatgcagaggtatttgaagtggtggagcgtgtggaagagctaagacggaagtggcca
gtggcatgggggaagttagacgacggcagcattggtgtggtgacaccatacgctgatcag
gtgttcagaatacgagctgaacttcggaagaagaggctctcggacgtgaatgtagaaagg
gtgctcaatgtccaaggaaagcaattcagagttctgtttcttagcacagtgcgtacacgc
cacacttgcaagcataagcagacgccaattaaaaagaaagagcaacttctggaagactcc
accgaggacttagattacgggtttctatccaactacaaacttctcaataccgccattacc
agagcacagtccctggttgctgtggtgggcgaccccgttgctctgtgctctattggaagg
tgtagaaagttttgggagcggtttattgccctgtgtcatgaaaaccacagcttgcacggg
atcacattcgaacagatcaaggcccagttagaggctttagagctcaagaagacttacgtg
ttgaacccactggctcctgaatttattccccgggctttcagactgcagcattcaggaaac
agtagcagacagcagcagtcaccacccaaggtgaaaagcctccatcatccccagaatgac
catttccagaatgatggaattgttcagcccaacccttccgtacttattggcaatcctatt
agagcatatactcctccaccccctcttggaccgcacccaaacttggggaaatctccaagc
cccgttcaaagaatagaccctcacactgggactagtattctttacgttcctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtgccgtggacagggtaccagggtagg
tttgcagttgatcctcggattattacacaccaggcagcgatggcctacaatatgaatttg
ttacacacacatgggcgtgggtcgccaatcccttatggtcttggacatcacccacctgtc
aacctaggccagccacagaatcagcacgcagagaaggatcaacaggagcaaaatcgaaac
ggtaaaactgatacaaataacccaggacctgaaattaataagatccgaacaccagagaaa
aaacctacagaacccaaacagattgatttggaatcaaatccacagaacagaagtcctgaa
tcccgtcctggtgttgtttattccaatactaaatttcctcgaaaagataatctcaaccca
agacacataaatcttcctcttcctgcgccacatacacagtatgcaatccctagccgccat
tttcatccgcttcctcagctacccaggccaccatttcccatttcccagcagcacacctta
ttaaatcagcagcagaataatttgcctgaacaaccaaatcagatgacacctcagccaaat
caggtggcaccccagccaaatcagatggcaccccagccaaatcagatggcaccccagcca
aatcaggtggtccagcagcagaaccaggcacctccacaggctccacagccagcacctcaa
ctctctcctgcatttcaggcggggcccaccaatgcatttttcaataatgcagttgctcat
cgaccacagtctcctgctgcagaggctgtgggtcctgagcagcaggtgcctcctgggctg
tccgacggccacagtccactgagagccatcacacagcctggccccatcctagcatcacct
ttgaacaactttgttgatgagagctctccaggattgcctatagaagaagctttggatcga
gtgcatggaagtgtagctctggagacactgaggcagcagcaggcacggctacagcagtgg
agtgagcaccatgcctacctgagccagggtggcatcccgtattcacaccatcaccatcct
cacctcgcccatcttccccagactcccattagcctccaccagccaccagtgagagcagag
tggaaagtcgccggcagggctgacgatgaaacagagacaacattctcaaggtttcaagac
ttactcagagagctgtcccatcgggatcaaggtgacactggagagctagctgaaatgcca
ccgcctcagtcaagacttctgcagtacagacaagtgcagcctcgaagcccaccagcagtc
ccgtcgcccccttcctctacagaccacagtagccactttgctaactttaatgacaacagc
agagacatcgaagtagccaacagcccagcattcccacagcgcctcccacctcagctattc
ggccccccttattcgttgcaatctgaacaccttgcccctccccctctgaaatacctggct
ccggaaggagcatggaattttgctaacttgcagcagaatcatttaatagggccgggcttt
ccctatggcctacctccattgcctccccggccaccacagaacccttttatacacatccag
aaccatcaacacgctgttggtcaagagccatttcacccactgccatctcgagcagtgtct
tcttcttcgctccccagcctagaagagtatgagcccagaggacctggtcggcccttgtac
caaagaagaatctcatctggcgcagcccagccttgtgtggaagaggccagcactccccaa
gacagcctggctcagggcaaagaaccgcaggaccacagtaacccacctgggttcggcttc
ccagcccccgagtcctgggccaacaccacctcatctgccccctaccagaacattccatgc
aatggatccagcaggacaagtcagcccagagagttgatagttccacccaagactgtcaaa
ccccctgaggatcagctgaagcctgacagtggggaggtgtccagttccttcaactactcg
gtgctgcagcacctcggccagttcccacccctcatgcccaacaagcagatcgcggagtct
gccaacagcagcagccagcagagcccggcagggagcaagcccgccatgtcctatgccagt
gcgctacgggccccgcccaagcccaggcctccgcccgagcaggccaagaagggcagcgac
ccactgtccctgttccaggagctcagcttgggcagcagcccgggaagcaatggcttctac
tcctacttcaagtga
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