Rattus norvegicus (rat): 287990
Help
Entry
287990 CDS
T01003
Symbol
Vps8
Name
(RefSeq) VPS8 subunit of CORVET complex
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
287990 (Vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
287990 (Vps8)
Membrane trafficking [BR:
rno04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
287990 (Vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
TPR_Vps41
Clathrin
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
zf-C3H2C3
zf-RING_5
WDR55
Beta-prop_HPS5
PHD
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
287990
NCBI-ProteinID:
NP_001414549
RGD:
1309443
Ensembl:
ENSRNOG00000001764
LinkDB
All DBs
Position
11:complement(92906702..93140844)
Genome browser
AA seq
1428 aa
AA seq
DB search
MENEPGQENLEQNPCARTVEEELNKSFNLEASLSKFSCIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEEESFVLEDPTLLNVDTIDSHSYDTSSVASSDSGDRANLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFDQ
NQALRLCLGSTSVGEQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHP
PGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLH
SKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVS
NCVNPMLAFCRGDTVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVE
KLHVIDRQTQEELETMEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGG
QIFYLGTKSVYVMMLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRK
AVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFSQMY
DKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDIT
SLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVVMG
NKLLVYISCCLAGRAYPLGDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLLH
FDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQL
AKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEK
AEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAM
DHMEELVSLKPCKAAELVATHFSGQIEVVIGQLQNQLLLFKFLRSLLDPRERVHISQESL
QIPPCVTEQFIELLCQFSPDQVIETLQVLDCYHLEETIQITQKYQLHEVTAYLLEKKGDV
HGAFLLLLERLQSRLQEMTRQNENTKEDIQLKAVEDTMVETIALCQRNSQNLNQQQREAL
WFPLLEAMMAPQKLSSSAAAPPHPHCEALKSLTMQVLNSMATFIALPSILQRILQDPIYG
KGKLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSI
CLQQYKRRQETADEIIVFSCGHLYHSFCLQSKECTLETEGQTRWTCYKCSSSNKAGKLSE
NPSESKKGRITSPQIKMSPSYHQSKGDPPARKANSEPVLDPQQTQAFDQLCRLYRGGSRL
ALLMELSQNRGGDSYRPFAGSQSGPAFNSIFQKENFQLQLAPPPVAED
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaaccaggccaggagaatttggaacagaacccgtgcgccaggactgtggaa
gaagagttgaacaagtcttttaatttagaagcttccctttcaaaattctcttgcatagat
ctggacaaggagctggagttcaaaaatgatctgatcgatgacaaggagtttgatattcct
caggtggatactcctccaactctggagagcattcttaacgagacggacgatgaagaggag
tcttttgttctggaggaccctacattgttaaacgtcgacaccatcgactctcactcctat
gacacctcatctgtggcaagctcagacagtggcgacagggccaacctaaagaggaagaag
aagttaccggattctttctccctgcatgggtcggttatgcgacattcactcctaaagggg
atatctgcacagatcgtgtcggcagccgacaaagtagatgctggcttgccgacagcaatt
gcagtgtccagtctgatcgcggtgggaacatctcacggattggctttaatatttgatcag
aatcaagcgctgcggctctgtctgggcagcactagcgttggggagcagtatggagccatc
tctgccctcagtatcaacaacgactgctcaagactcctctgtggctttgctaaaggacag
atcaccatgtgggatttggccagtgggaaacttctcagatcaataacagatgctcatcct
ccagggaccgcgatcttgcacatcaagttcacagatgatccaactcttgcgatttgcaac
gacagtggaggctctgtttttgagctaacatttaagagagtcatgggcgtgagaacgtgt
gagtctaggtgtctgttcagcggctccaagggtgaagtctgctgcatcgagcccctgcat
tccaagcccgagttgaaagaccatcccatcacacagttctcactgctggccatggcgtcc
ttaacaaagattttggtcattgggttgaaaccgtccctgaaagtgtggatgactttcccc
tacggacggatggatccttccagtgtcccgttgctggcctggcacttcgtggcagtgagt
aactgtgtgaatcccatgcttgccttctgcagaggcgacactgttcacttcctcctggtt
aagagagatgagtctggcgcaatacacgtcaccaagcaaaagcaccttcacctgtactac
gacctgatcaacttcacttggataaactcccgcacagttgtgcttttagacagcgtggag
aagctccacgtgattgatcggcagactcaggaggaactggagaccatggagatctcagaa
gtccagctggtctacaacagcagccacttcaagtcactggccacgggcgggaacgtgagc
caggccctggctttggttggagagaaggcttgctaccaatccatcagtagctatggagga
cagatcttctatctggggacaaagtccgtttacgtgatgatgctgagaagctggagggag
aggatggaccatctcctgaaacaggattgcctcacggaagccttggcccttgcgtggtct
tttcatgaaggaaaggcaaaagcagtagtggggctttctggcgatgtcagcaagaggaag
gctgtcgttgcagaccggatggtagagattctgttccattatgcagatcgggctctgaaa
aagtgcccagaccagggaaaaatccaagtgatggagcagcactttcaggatacggtgcca
gtcatagtggactactgccttctgctccagcgaaaggatcttctatttagccaaatgtac
gacaaactaagtgaaaattccgtggcgaaaggcgtgtttttagagtgcctggagccatat
atcctaagtgataaactggtgggaattacaccccaggtcatgaaagatctgatcgttcat
ttccaagataaaaaactaatggagaatgtggaagccctcattgtccacatggacatcacc
agcctggacattcagcaggtggttctcatgtgttgggagaatcgtctgtatgacgccatg
atctatgtctacaatagaggcatgaatgagtttatcagtccaatggagaagcttttcaaa
gtcatcgccccacctctgaatgcagggaagacgctcacagatgagcaagtcgttatgggc
aacaagcttctggtgtacatcagctgttgcctggcaggtcgtgcctaccctcttggtgac
attcctgaagatcttgtccccttggttaaaaaccaggtttttgagtttctgattcgcctg
cattctgtggaagcatcctctgaggaagaagtctatccttatgttcggactttgctacat
tttgatacaagagaatttctgaatgtgttggcactgacctttgaggactttaaaaatgat
aagcaagccgtagaataccagcagcgcattgtggatattttactgaaagttatggtggag
aattcagatttcaccccgtcacaagtggggtgcctctttacattcctcgctcggcagctc
gcgaagcccgacaataccttgtttgtgaacagaaccctctttgatcaagtccttgagttc
ctctgtagccctgacgatgactcccgccattctgaaagacagcaggtgcttttagaactg
ctgcaggctgggggcatcgttcagtttgaagagagtcggctcatccgcatggcagaaaag
gcagaattctatcagatctgtgaatttatgtatgagcgagaacaccagtatgacaagatc
attgactgctacctgcacgacccgttgagagaggaagaagtcttcaattatatccacaac
atcttgtctatccccggtcacagtgctgaggagaagcagtccgtgtggcagaaagcaatg
gatcacatggaggaacttgtgtccctgaagccctgtaaggctgcagagttggttgctact
cacttctctggacagattgaagtagtcattggacagcttcagaaccagcttttgcttttc
aagtttttgaggagtcttcttgatccaagggaacgtgtccacatcagtcaggaatccctg
cagatcccaccttgcgttacagagcagttcattgagctcctgtgccagttcagtcctgac
caagtcatagagacactgcaagtcctcgactgctaccatctggaggaaactattcagatt
acacaaaagtaccagctccacgaagtcactgcatatctgttggagaagaagggggatgtc
catggtgccttcctgctgctgctggagaggctgcagagcaggctgcaagagatgacccgg
cagaatgaaaataccaaggaggacatccaactgaaagctgttgaagataccatggtagag
accattgctctttgccagagaaattcacagaatttgaatcagcagcaacgagaggcgctg
tggtttccactgttggaggcaatgatggcaccacagaagctgtccagctcggctgctgct
cctcctcatccgcactgtgaggctctgaagtctttgaccatgcaagtcctaaacagcatg
gccacgttcatcgccctcccatccatcctacagagaatcctgcaggacccaatttatgga
aaaggaaaacttggagagatccagggccttatcctggggatgctggacacctttaactat
gagcaaaccttgctagaaacgacagccagcctcctgaaccaggatctccactggtcactg
tgtaacctgagagcgtcagtgtccagaggactcaatcccaaacaggattactgttctata
tgtttacagcagtacaaaagacgccaagaaacggccgatgagattatcgtcttcagctgt
ggccatttgtatcattcgttctgtctacaaagtaaggaatgcaccctagaaactgagggt
caaacaagatggacgtgctacaaatgcagctcaagtaacaaagcgggcaaactcagtgag
aatccttccgagagtaagaagggacggataacctcgccacagataaaaatgtctccctcg
tatcatcagtccaaaggggaccctcctgcccggaaggcaaactcagaacctgttctggac
ccacagcaaacgcaagcctttgaccagctctgccggctgtaccgaggaggttctaggctg
gctctccttatggaactctcgcagaaccgaggtggcgacagctataggccatttgccggc
tcccagagcgggcctgctttcaacagcatcttccagaaggagaacttccagctgcagctt
gcacctccacctgtggctgaagactga
DBGET
integrated database retrieval system
