Rattus norvegicus (rat): 288482
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Entry
288482 CDS
T01003
Symbol
Usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rno01002
]
288482 (Usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rno04121
]
288482 (Usp42)
Enzymes [BR:
rno01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
288482 (Usp42)
Peptidases and inhibitors [BR:
rno01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
288482 (Usp42)
Ubiquitin system [BR:
rno04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
288482 (Usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
288482
NCBI-ProteinID:
NP_001099379
RGD:
1305231
Ensembl:
ENSRNOG00000001059
Vega:
OTTRNOG00000001906
UniProt:
D3ZU96
LinkDB
All DBs
Position
12:15903110..15954429
Genome browser
AA seq
1325 aa
AA seq
DB search
MTIVDKTEPSDPSTCQNQPGSSEAVSPEDMDTGSASWGAVSSISDVSNHTLSLGPVPGAV
VYNNSSVPEKSKPSPPKDQVLGDGIAPPQKVLFPSEKICLKWQQSHRVGAGLQNLGNTCF
ANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVIN
EMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSR
VKCLNCKGVSDTFDPYLDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPAS
KRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLV
HTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLNQQAYVLFYIRSHDVKNGGET
THPAHSPGQSSPRPGISQRVVNSKQAAPGFIGPQLPPHVMKNTPHLNGTTPVKDTPSSSV
SSPNGNTSVNRASPATASTSVQNWSVNRPSVIPEHPKKQKITISIHNKLPVRQGQAQLNN
NLHGPCLEAPSKAAPSSTITNPSAIQSTSNAPTTSVSPSESCPKPMVNGKAKVGSSVLVP
YGAESSEESDEESKGLAKENGVDMMTSTQSSRPETADEDGEASPHELQESVMLNGANSAD
SDSRESSLAFDSASCQVQPDLHTENLFNKLNGLPGKVTPAPLQSVPEDKILETFKLTNQA
KGPAVEESWTTTGGSSPRASVSQPEPITDETSPLEIPEAVTNGSMKTPSTTSPLEPTISC
TKEDSSVVVVSAEPMEVLPSVPALCNSTGTTLGDAPVPESCDPGDLTANPSQPSQAVKGD
PAENSENSTLAEVVERLSPAPSVLTGDGCEQKLFLYLSTEGSEEAEDSSRSSAVSADTVP
PQPDRTTSSCAGAAEQAAGDRGDGGSVGPKAQEPSPAKEKMNSLRKVDRGHYRSRRDRSS
SGEHVRDSRARPEDHHHKKRRCYSRERPKQERHPANTYCNGGQHLGHGDRASPERRSLSR
YSHHHSRVRSGLEQDWSRYHHSENEPAWARERFYPDKMRWDKCRYYHDRYTTTLYTAREA
AREWRPLHGREHERLVQSGRPHKDSYWGRKGWDLQSRGKERPHFHSPREAPGLAVPLERH
LQEKAALSVQDSSHSLPERFHEHESVKLRKRRYETLDNNDDHPEKKVHKSLEKDALEEPR
AKKHKKSKKKKKSKDKHRARDSRHQQESDFSGAYSDADLHRHRKKKKKKKRHSRKSEDFI
KDVEMHLPKLSSYEAVGHFRRTEGTFLLADGLPVEDSGPFREKTKHLRMESRPDRCHLSE
YGQGN
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacaaaactgaaccttcagacccatcaacctgtcagaaccagcctggc
agttctgaggcggtctcacctgaagacatggacacaggctctgccagctggggtgccgtg
tcttccataagtgatgtctcaaatcatacactttcattggggccggtgcctggtgctgta
gtttacaataactcgtctgtacctgagaaatcaaaaccatcaccaccaaaggatcaagtc
ctaggtgatggcattgctcctcctcaaaaggtcctatttccatctgaaaagatttgtctt
aagtggcaacaaagtcatcgagttggcgctgggctgcagaatttgggcaatacctgtttt
gccaatgctgcgttgcaatgtctgacttacacaccacccctcgccaactacatgctatcc
catgaacactccaagacatgccatgcagaaggattctgtatgatgtgcacaatgcagacg
cacattacccaggcacttagcaaccctggggatgttatcaagcccatgttcgtcatcaat
gaaatgcggcgtatagctagacatttccgttttggtaaccaagaagatgcccatgaattt
cttcagtacacggtcgatgccatgcagaaagcatgtttaaatggcagcaataaattagac
agacatacccaggccaccaccctggtctgccagatatttggaggctacctaagatcccga
gtcaagtgtttaaattgcaagggtgtttcagacacctttgatccatacctggacataaca
ctggagattaaggctgcacagagcgttaccaaggcgctggaacagttcgtgaagccagaa
caactggatggagaaaactcctacaaatgtagcaagtgcaaaaagatggttccagcttca
aagagattcaccatccataggtcctctaatgttcttaccatttcactgaaacggtttgcc
aactttaccggtggaaaaattgctaaggacgtgaaatatcccgagtaccttgatatccgg
ccctatatgtctcagcccaacggagagcccatcatttatgttttgtatgctgtgctggtg
cacaccggttttaactgtcatgctggccactacttttgctacatcaaggctagcaatggc
ctctggtatcagatgaatgactctatcgtgtccaccagtgatattagatcggtgcttaac
cagcaggcttacgtgctcttttatatcaggtcccatgatgtgaaaaatggaggggagacc
actcatcctgcccatagccctggccagtcctccccccggccagggatcagtcagcgtgta
gtcaacagcaagcaggcggcgccaggattcatcgggccgcagctgcctccccatgtgatg
aagaacacaccacacttgaatggcaccacgccggtgaaagacacaccaagcagttctgtt
tcaagccctaacggaaacaccagcgtcaatagggccagtcctgctacggcttcgacgtct
gtgcagaactggtctgttaacaggccctcagttattccggaacaccctaagaaacaaaaa
attactatcagtattcacaacaagttgcctgttcgtcaaggtcaggcacagctgaataac
aacctccatggcccttgtctggaggcccctagcaaggcggccccctcctccaccatcact
aacccttctgcaatacagtctacctcgaatgcacccacgacatcagtttccccaagtgag
tcctgtcccaagcccatggtgaatggcaaggctaaagtgggctccagtgtgctcgtcccc
tatggggctgagtcctcagaggagtctgatgaggagtccaagggcctggccaaggagaac
ggtgtggacatgatgaccagcactcagtccagtagaccagaaaccgcagatgaggacggt
gaggcttcccctcatgagcttcaagagtccgtcatgctaaatggtgctaatagcgcagac
agtgactcgagagagagcagcctggcatttgacagtgccagctgccaggtccagcccgat
ctacacacagaaaacctctttaacaaactcaatggtcttcctggaaaggtgacgcccgct
ccattgcagtctgttcctgaagacaaaatccttgagactttcaagcttaccaaccaggca
aaaggtccagcggttgaagagagttggactacaacagggggaagctctccaagggcctct
gtttcacagccggagcccatcaccgatgagaccagtccccttgagataccggaggcagtc
accaacgggagcatgaagaccccttccaccacgtcacctctggagcccaccatcagctgt
accaaagaagactcttccgtcgtcgtcgtctcagcagaacctatggaggttttgccttcc
gtccctgctctctgtaacagcaccggtactaccttgggggatgccccagtgcccgaatcg
tgtgaccctggagacttgactgccaacccgagccaaccatcgcaagcggtgaagggtgat
ccagctgagaactctgagaactccaccttggctgaagtggtggagaggctgagccctgct
ccctctgtgctcacaggggacgggtgtgagcagaaactcttcctttacctcagtacagag
gggtccgaggaggcagaagactcctccaggagctcggcagtctctgctgacacggtgccc
cctcagcctgacaggaccaccagctcctgtgcaggggctgccgagcaggctgccggggat
agaggcgatggaggcagtgtgggacccaaagctcaggagccctccccggccaaggaaaag
atgaacagccttcggaaagtggatcgaggacactatcggagccggagagaccggtcctcc
agtggggagcacgtgagggacagcagggcccgaccagaggaccatcaccataagaagcgg
cgctgctacagccgagagcggcccaagcaggagcgccaccctgctaacacatactgcaat
gggggccagcacctgggccacggcgacagagccagccccgagcgccgctccctgagcagg
tacagccaccatcactcacgggttaggagtggcctggagcaggactggagccggtaccac
cactcggaaaatgagcctgcctgggccagggagaggttctacccggacaagatgcgctgg
gacaagtgtaggtattaccacgacaggtacactacgaccctgtacacggcccgggaggca
gcccgcgagtggcggcctctacatggtcgtgagcatgaacgccttgtccagtctggacgg
ccacacaaggacagctactggggccgcaagggctgggacctacaatcccgggggaaggaa
cggccccacttccatagcccacgagaggcccctggccttgctgtacccctcgagaggcat
ctccaagagaaggctgcgctgagtgtgcaggacagcagccacagtctccctgagcgcttt
catgaacacgaaagtgtcaagttgaggaaaaggaggtatgagactctagacaataatgac
gaccatccagaaaagaaagtccacaaaagcctggagaaggacgcgctagaagagccaagg
gcaaagaagcacaaaaaatctaaaaagaaaaagaagtccaaagataaacaccgggctcgg
gatagcaggcaccagcaagaatccgacttttcaggagcatactctgatgctgacctccat
agacaccggaagaaaaagaagaaaaagaaaaggcattcaaggaagtcggaggactttata
aaagatgttgagatgcatttaccgaagctctcgagctatgaggccgttggccatttccgg
agaacagagggcacctttctactggctgatggtctgcctgtggaagacagcggccctttc
cgggagaaaacgaagcatttaaggatggaaagccggcctgacagatgtcatctgtcagag
tatggccagggtaactaa
DBGET
integrated database retrieval system
