Rattus norvegicus (rat): 288498
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Entry
288498 CDS
T01003
Symbol
Wipi2
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 2
KO
K17908
autophagy-related protein 18
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04136
Autophagy - other
rno04140
Autophagy - animal
rno05010
Alzheimer disease
rno05014
Amyotrophic lateral sclerosis
rno05016
Huntington disease
rno05017
Spinocerebellar ataxia
rno05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
288498 (Wipi2)
04136 Autophagy - other
288498 (Wipi2)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
288498 (Wipi2)
05014 Amyotrophic lateral sclerosis
288498 (Wipi2)
05016 Huntington disease
288498 (Wipi2)
05017 Spinocerebellar ataxia
288498 (Wipi2)
05022 Pathways of neurodegeneration - multiple diseases
288498 (Wipi2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
288498 (Wipi2)
03029 Mitochondrial biogenesis [BR:
rno03029
]
288498 (Wipi2)
Membrane trafficking [BR:
rno04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
288498 (Wipi2)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
288498 (Wipi2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
DUF7165
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_RSE1_2nd
BCAS3_WD40
VID27
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
288498
NCBI-ProteinID:
NP_001007616
RGD:
1359154
Ensembl:
ENSRNOG00000001114
UniProt:
Q6AY57
A6K1P6
LinkDB
All DBs
Position
12:complement(17024876..17053306)
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AA seq
445 aa
AA seq
DB search
MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
DGMFLSASSNTETVHIFKLEAVREKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
AFATVRLPFCGHKNICSLTTIQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGS
METTSEIVDSASHDCPLVTQTYGTAAAKGAYVPSSPTRLGKGQDANLEAYTDDLGAVGGA
CLEDEASALRLDEDSEHPPMILRTD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggcaagccagagcggagaggccggcgccggccagctgctgttcgccaacttc
aaccaggataacacgtccctagctgttggtagtaagtccgggtataagtttttctcccta
tcttctgtggataagctggaacagatctatgaatgcactgacaccgaagatgtctgcatc
gtggagagattgttctcaagcagcttggtggccatcgtcagcctcaaagctcccaggaag
ctgaaggtttgccactttaagaaggggactgagatttgcaactacagctactccaacacc
atcctggctgtgaagctgaacaggcagaggctcatcgtgtgtctagaagagtcgctctat
atacacaacatccgggacatgaaggtacttcataccatccgagagacacccccgaaccct
gcaggcttgtgtgcactgtcaataaacaatgacaactgctacttggcgtacccagggagt
gcgaccattggagaggtgcaggtcttcgacaccattaacttgagggctgcaaacatgatc
ccagctcatgacagtcccttagcagccctggcttttgacgcaagtgggaccaagcttgcc
actgcttctgagaaggggactgtgattcgagtgttctccattccagagggacagaagctg
tttgagttcaggagaggagtgaaaaggtgtgtgagcatctgctccctggccttcagcatg
gacggcatgtttctctccgcatccagcaacaccgaaacagtgcacatcttcaaacttgaa
gccgtgagggaaaaacctccggaagagcccaccacctggactggctactttgggaaggtt
ctcatggcatctaccagctacctgccctcacaagtgacagaaatgttcaatcagggaagg
gcctttgccaccgtccgcctgccattttgtggccacaaaaacatctgctcactcaccaca
attcagaagatcccgcgattgctggtgggagcgtcggatggttatttgtacatgtacaac
ctggacccccaggaaggcggcgagtgcgccctgatgcgtcagcacaggcttgatggcagc
atggagacgaccagtgaaattgtagactctgcatctcatgactgccccttagtaacgcag
acatacggcacagcagctgccaaaggtgcctatgtgccctcgtccccaacaagacttggt
aaaggacaggacgccaacttggaagcctacaccgatgacctgggtgctgtgggtggcgca
tgcctagaggatgaagccagcgctctacgcctggatgaagatagtgaacatcctcccatg
attctccggactgactga
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