Rattus norvegicus (rat): 288498
Help
Entry
288498 CDS
T01003
Symbol
Wipi2
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 2
KO
K17908
autophagy-related protein 18
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04136
Autophagy - other
rno04140
Autophagy - animal
rno05010
Alzheimer disease
rno05014
Amyotrophic lateral sclerosis
rno05016
Huntington disease
rno05017
Spinocerebellar ataxia
rno05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
288498 (Wipi2)
04136 Autophagy - other
288498 (Wipi2)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
288498 (Wipi2)
05014 Amyotrophic lateral sclerosis
288498 (Wipi2)
05016 Huntington disease
288498 (Wipi2)
05017 Spinocerebellar ataxia
288498 (Wipi2)
05022 Pathways of neurodegeneration - multiple diseases
288498 (Wipi2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
288498 (Wipi2)
03029 Mitochondrial biogenesis [BR:
rno03029
]
288498 (Wipi2)
Membrane trafficking [BR:
rno04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
288498 (Wipi2)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
288498 (Wipi2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
DUF7165
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_RSE1_2nd
BCAS3_WD40
VID27
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
288498
NCBI-ProteinID:
NP_001007616
RGD:
1359154
Ensembl:
ENSRNOG00000001114
UniProt:
Q6AY57
A6K1P6
LinkDB
All DBs
Position
12:complement(17024876..17053306)
Genome browser
AA seq
445 aa
AA seq
DB search
MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMI
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
DGMFLSASSNTETVHIFKLEAVREKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
AFATVRLPFCGHKNICSLTTIQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGS
METTSEIVDSASHDCPLVTQTYGTAAAKGAYVPSSPTRLGKGQDANLEAYTDDLGAVGGA
CLEDEASALRLDEDSEHPPMILRTD
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggcaagccagagcggagaggccggcgccggccagctgctgttcgccaacttc
aaccaggataacacgtccctagctgttggtagtaagtccgggtataagtttttctcccta
tcttctgtggataagctggaacagatctatgaatgcactgacaccgaagatgtctgcatc
gtggagagattgttctcaagcagcttggtggccatcgtcagcctcaaagctcccaggaag
ctgaaggtttgccactttaagaaggggactgagatttgcaactacagctactccaacacc
atcctggctgtgaagctgaacaggcagaggctcatcgtgtgtctagaagagtcgctctat
atacacaacatccgggacatgaaggtacttcataccatccgagagacacccccgaaccct
gcaggcttgtgtgcactgtcaataaacaatgacaactgctacttggcgtacccagggagt
gcgaccattggagaggtgcaggtcttcgacaccattaacttgagggctgcaaacatgatc
ccagctcatgacagtcccttagcagccctggcttttgacgcaagtgggaccaagcttgcc
actgcttctgagaaggggactgtgattcgagtgttctccattccagagggacagaagctg
tttgagttcaggagaggagtgaaaaggtgtgtgagcatctgctccctggccttcagcatg
gacggcatgtttctctccgcatccagcaacaccgaaacagtgcacatcttcaaacttgaa
gccgtgagggaaaaacctccggaagagcccaccacctggactggctactttgggaaggtt
ctcatggcatctaccagctacctgccctcacaagtgacagaaatgttcaatcagggaagg
gcctttgccaccgtccgcctgccattttgtggccacaaaaacatctgctcactcaccaca
attcagaagatcccgcgattgctggtgggagcgtcggatggttatttgtacatgtacaac
ctggacccccaggaaggcggcgagtgcgccctgatgcgtcagcacaggcttgatggcagc
atggagacgaccagtgaaattgtagactctgcatctcatgactgccccttagtaacgcag
acatacggcacagcagctgccaaaggtgcctatgtgccctcgtccccaacaagacttggt
aaaggacaggacgccaacttggaagcctacaccgatgacctgggtgctgtgggtggcgca
tgcctagaggatgaagccagcgctctacgcctggatgaagatagtgaacatcctcccatg
attctccggactgactga
Rattus norvegicus (rat): 303630
Help
Entry
303630 CDS
T01003
Symbol
Wipi1
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1
KO
K17908
autophagy-related protein 18
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04136
Autophagy - other
rno04140
Autophagy - animal
rno05010
Alzheimer disease
rno05014
Amyotrophic lateral sclerosis
rno05016
Huntington disease
rno05017
Spinocerebellar ataxia
rno05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
303630 (Wipi1)
04136 Autophagy - other
303630 (Wipi1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
303630 (Wipi1)
05014 Amyotrophic lateral sclerosis
303630 (Wipi1)
05016 Huntington disease
303630 (Wipi1)
05017 Spinocerebellar ataxia
303630 (Wipi1)
05022 Pathways of neurodegeneration - multiple diseases
303630 (Wipi1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
303630 (Wipi1)
03029 Mitochondrial biogenesis [BR:
rno03029
]
303630 (Wipi1)
Membrane trafficking [BR:
rno04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
303630 (Wipi1)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
303630 (Wipi1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40_MABP1-WDR62_2nd
WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
WDR55
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_WDR35_TULP_N
Beta-prop_RSE1_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
EIF3I
DUF5711
BCAS3_WD40
Big_2
Motif
Other DBs
NCBI-GeneID:
303630
NCBI-ProteinID:
NP_001120769
RGD:
1307754
Ensembl:
ENSRNOG00000003827
UniProt:
B2RYM2
LinkDB
All DBs
Position
10:complement(95042451..95079679)
Genome browser
AA seq
446 aa
AA seq
DB search
MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKTGYKLFSLSSVEQLDQVHGSNEIPDV
YIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYCYSSNILSIRLNRQRLLVCLEES
IYIHNIKDMKLLKTLLDIPSNPTGLCALSINHSNSYLAYPGSQSTGEIVLYDGNSLKMVC
TIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVF
SMDSQFLCASSNTETVHIFKLEQLTDSRPEEPSTWSGYMGKMLTAATNYLPAQVSDMMNQ
DRAFATGRLNFSGQKNICTLSTIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLL
SSGTAEENKENDLRPSLPPSYAATVARPSASTASTVPGYSEDGGALRGEVIPEHEFATGP
VCLDDENEFPPIILCRGSQKGKTKQS
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgaagctgcagatgcccctccgggccgagtggaggcggcgctcagctgcttc
tctttcaaccaagactgcacatccctagcgattggaaccaagactggttacaagctgttt
tctctgagttctgtggagcaacttgaccaagtccatggaagcaatgaaatccccgacgtg
tatattgtggagcgcctcttctccagcagcctggttgtggtggtcagtcacacaaaacct
cggcagatgaacgtctaccacttcaagaaaggcaccgagatctgtaattactgctactcc
agtaacattttgtctattcggctgaaccgacagagactgctggtctgcctggaagaatcc
atctatatccacaatattaaggacatgaagctattgaagaccctcctggatatcccttca
aacccgacaggtctctgtgccctttcaatcaaccattccaactcttacctggcctacccc
ggaagccagagtacaggcgagattgtactctatgacggaaactccctgaaaatggtgtgc
accattgctgcccacgagggaaccctggccgccatcaccttcaactcctccggctccaaa
ctagcaagtgcgtctgaaaaaggcaccgtcatccgagtgttctctgtgcccgaagggcag
aaactctatgagttccgtcgaggaatgaaaaggtatgtgacaatcagctctctggtgttc
agtatggactcccagttcctgtgtgcctccagcaacacggagaccgtgcacatcttcaag
ttggaacagctgaccgacagccgcccagaagagccttccacctggagcggctacatggga
aagatgctcacggcggctaccaactacctccccgcccaggtgtcggacatgatgaaccag
gacagggccttcgccacaggacgcctgaacttctctgggcagaagaacatttgcaccctg
tccacgatccagaaactgccgcggctgctagtagcctcctccgatggacacctctacatc
tacaatttggaccctcaggatggaggagaatgcgtcttaatcaaaacccacagcttgctg
agctcaggaacagcagaagagaacaaagaaaacgacctcagaccttccttacctccgtcg
tatgctgcaactgtagccagacccagcgcatccacagcctccaccgtgccagggtactct
gaggacggtggggcgctccgtggagaagtgattccagaacacgagtttgcaacgggccca
gtgtgtcttgacgatgagaatgagttcccccctataatcttgtgccgtggaagtcagaag
ggcaaaacgaagcagtcctga
DBGET
integrated database retrieval system