Rattus norvegicus (rat): 289026
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Entry
289026 CDS
T01003
Symbol
Sox13
Name
(RefSeq) transcription factor SOX-13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
289026 (Sox13)
Transcription factors [BR:
rno03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
289026 (Sox13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
289026
NCBI-ProteinID:
NP_001099422
RGD:
1309674
Ensembl:
ENSRNOG00000028353
Vega:
OTTRNOG00000000634
UniProt:
A6IC79
LinkDB
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Position
13:complement(47383145..47427572)
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AA seq
612 aa
AA seq
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MSVQSPVSVQLAPDSASTMVNCTVKSEEKKEPCHEAPQGTATAVEPQPGDPALASQDATN
SKAPAQDCASPQSSGSPDPKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERF
LGRSSVEAKDVKGTQESLAEKELQLLVMIHQLSALRDQLLTAHSEQKNMAAMLFEKQQQQ
MELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNMPYVMIPAFPSSHQPLPVTPDSQLA
LPIQPIPCKPVEYPLQLLHSPPAPVVKRPGVATHHPLQEPPQPLNLTAKPKVSELPNTSS
SPSLKMNSCGPRPSSHGAPTRDLQSSPPNLPLGFLGEGDAVTKAIQDARQLLHSHSGALE
NSPSAPFRKDLISLDSSPAKERLEENCVHPLEEAMLGCDVDGSRHFSESRNSSHIKRPMN
AFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYP
DYKYKPRPKRTCVVEGRRLRVGEYKALMRTRRQGARQSYAIPPQAGQAQVSSDILFPRAA
GMPLARPLVEHYDPQGLDPNMPVIINTCSLREEGEGTDDRHSVADGEMYRYSEDEDSEGD
EKSEEELVVLTD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgcagagccccgtctctgtgcagctggccccagacagcgctagcaccatggtg
aactgcaccgtcaagtctgaggagaagaaggagccttgccacgaagctccccaaggcaca
gccactgcagtggagccccagcctggagacccagccctggcctctcaggatgccaccaac
tccaaagcccctgctcaggactgtgcctcaccacagagcagtgggtccccagaccccaag
agaccagcagcttccgaggctgcttcgggaagccaggagcggctggacttcaaccgcaac
ttacaggaagttgttccagccattgagaagctgctgtccagtgactggaaggagaggttt
ctgggaagaagctctgtggaagctaaggatgtcaaagggacccaagagagcctggctgag
aaggagctccagcttctggtcatgatccatcagctctccgcccttcgggaccagctcctt
acggcccactctgagcagaagaacatggctgccatgctgtttgagaaacagcagcagcag
atggaactggccaggcagcagcaggagcagatcgccaagcaacagcagcagctgattcag
cagcagcacaagatcaacctcctccagcagcagatccaggttaacatgccttatgtcatg
atcccggcctttccctcaagtcaccagcctttgcctgtcactcctgactcccagctggct
ttgcccattcagcccattccctgcaagccagtggagtacccactgcagctgctgcacagc
ccgcctgcccccgtggtgaagaggcctggggtggccacccaccaccccctgcaggagccc
ccacaaccactgaacctcacagccaagcccaaggtctctgagctacccaacacctccagc
tctcccagcctgaagatgaacagttgtgggcctcgcccctccagccatggggctcccaca
agggatctgcagtccagccccccgaacctgcctctgggcttccttggggaaggggacgct
gtcaccaaagccatccaggatgctcggcaactgctacacagccacagtggggccttggaa
aactcccccagtgccccattccgaaaggacctcatcagcctggactcctccccagccaag
gagcggctggaggagaactgtgtgcatcccctggaggaagccatgctgggctgtgacgtg
gatggctctcgccatttctccgagtctcggaacagcagccacatcaagagacccatgaat
gccttcatggtgtgggccaaggatgagcggaggaaaattcttcaagccttcccagatatg
cataactccagcatcagcaagatccttggttctcgctggaagtccatgaccaaccaggag
aagcagccgtactacgaggagcaggcccgtctgagccgacagcacctggagaaatatccc
gactacaagtacaagccaaggcctaaacgcacctgtgtcgtggagggccggcggctgcga
gtgggcgagtacaaagccctgatgaggacacggcgccagggtgctcgccaaagctacgcc
atccccccgcaggctggccaggcacaggtgagctcagatatcctgttccctcgggcagca
ggcatgcccttggcacgtccactggtggagcactatgacccccagggcctggaccccaac
atgcctgtcatcatcaatacctgcagtctccgggaggaaggggagggcacagatgacagg
cactcggtggccgatggagagatgtaccggtacagcgaggatgaggactcagagggtgac
gagaagagtgaggaggagctggtggtactcacagactga
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