Rattus norvegicus (rat): 290629
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Entry
290629 CDS
T01003
Symbol
Ushbp1
Name
(RefSeq) harmonin-binding protein USHBP1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rno03037
]
290629 (Ushbp1)
Cilium and associated proteins [BR:
rno03037
]
Primary cilia and associated proteins
USH complex and associated proteins
290629 (Ushbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
FlaC_arch
Ago_Mid
Motif
Other DBs
NCBI-GeneID:
290629
NCBI-ProteinID:
NP_001028859
RGD:
1310859
Ensembl:
ENSRNOG00000023485
UniProt:
Q3T1I3
A6K9T1
LinkDB
All DBs
Position
16:complement(18091311..18101927)
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AA seq
680 aa
AA seq
DB search
MSARATRPRSRRGRHPLPGELDPVAESSEEVDTTNGSFETKPELLQEHLGPSLQGPGNRI
KEDCDVGSHGVLPLSPEERREPEVEAHQALQEAPLDTGPAEITAPNVYETLKCRLSSLEA
VVAAWRRHSLSFSKPVEAEDRDPGAPGSFGNEEEASGPGQQEAAHFIERNAWLRLALGTR
EEELARTQASLQDAQAENETLQRQVQELEDSLMQLEASPPPSMLRAGRRNSNSSSSGAER
RPWAPQDSPMAHPFLQRLRSDSSTQSFGCLSTQRPSPEMYLMEDQMGQLQGNIEKLKCFN
RLLLAVLQGYKGRCESLSIKLGKREAEATALHLALQYSKDCEEVYEVLLALKTAGLGAGV
GATNGDLQAAEKEASRLLVKKEVAMDVKTPQPSPEGSSVDKPTPEELAAQLHGYVQHLRE
RWALLKIPPVLDPATAPKPTMPHAEATVQTILEIQPGPTLPQLEKSQIQQDLAATRDGLA
DLVLRLQLAQREKRGLELREAALRAQGPALRLLLQQLRWEQAHLMGDGSSGGSSEDPSSE
EEAGEDRQQHYQGPPALLGGQMGKVWDSETVSQELSASLTRAVDLRAQLQSLRRQLEQMA
QKGRTRGAQSAELNRELCKAHSALALAFREAHRKQEEQCRKLEQQMARMQAQQAEELAVL
TATARALGDPGAPQPVQTFL
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcccgggccacacgaccccgaagccggcgagggaggcatcctctgcctggggag
ctggacccagtagctgagagctcagaggaggtagataccaccaatgggagcttcgagact
aaacctgagctgcttcaggaacatcttggtcctagcctgcagggccctgggaaccggatc
aaggaggattgtgatgtgggatcccatggggtcctacccttgagcccggaagaacggcgc
gagcctgaggtggaagcccaccaggccctgcaagaagcccctctggatactggccctgct
gagataacagcacccaatgtgtatgagaccttgaagtgcaggctgagctccctggaggca
gttgtagctgcctggcgccgccactcgctaagcttttcaaagccagtggaggcagaagac
agagacccgggagctccggggtcttttggtaatgaggaagaagcctctggacctggacag
caggaggcagcgcacttcatagagaggaacgcctggctccggctggccctgggcacccgg
gaggaggaactggcgcggactcaggcttcactgcaggacgcccaggcagagaatgagact
ctgcagagacaggtacaggagctggaggattccctgatgcagctggaggcctccccgcct
ccctccatgctcagagcaggccgtagaaacagcaactccagcagttctggggcagaaagg
agaccctgggcacctcaggactcccccatggctcacccctttctccaacgccttcggagt
gactccagcacccagagctttgggtgcctttccacacagcgtccatccccagagatgtac
ctcatggaagaccagatgggacagctccaggggaacattgagaagttgaagtgcttcaac
cgcctcctgctggctgtgctccagggctacaagggccgctgtgagagcctcagcattaag
ctgggcaagagagaggctgaggccacagccctgcacctggctctacaatatagcaaggac
tgtgaggaggtgtatgaggtgctgcttgctctgaagacagctggtctaggagctggagtt
ggagctaccaatggcgacctgcaggctgctgagaaggaggcctctaggctgctggtgaag
aaggaagtagccatggatgtaaagacaccccagcccagtccagagggcagtagtgtggac
aagcctacaccagaggaactggctgctcagctccacggctatgtccagcatctccgagaa
cgctgggctctgctgaagatccccccagtacttgatcctgccactgcacccaagcccact
atgccccatgcagaagcaacagtgcagaccattctggagatacagcccgggcccaccttg
cctcagctggagaagtctcagatccagcaggacctagcggctactcgggacggtctggct
gacctggtgctgcggctgcagctagcacagcgagagaagcgcgggctggagcttcgggag
gcggctctgcgggcccagggccctgctctccgactgctcctgcagcagcttcgctgggag
caggctcatctcatgggcgatggcagcagcggaggcagcagcgaggacccgagcagcgag
gaggaggctggggaggacagacagcagcactaccagggtcctcctgctctcctgggtggt
cagatgggcaaagtgtgggactctgagaccgtatcccaggaactgtcagcatctctgacc
cgggcagtggacctgcgggcgcagctgcagtccctgcggcggcagctggaacagatggct
cagaagggccgaaccagaggagctcagagtgctgagctgaacagagagctgtgcaaggct
cacagcgctctggctttggccttcagagaagcccaccggaagcaggaagagcaatgccgg
aagttggagcagcagatggctcggatgcaggctcagcaggcagaggagttggcagtgctg
acagctaccgccagggccctgggggatcctggggcaccccagccagtccagaccttcctg
tag
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integrated database retrieval system
