KEGG   Rattus norvegicus (rat): 290647
Entry
290647            CDS       T01003                                 
Symbol
Lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    290647 (Lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    290647 (Lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    290647 (Lsm4)
   03041 Spliceosome [BR:rno03041]
    290647 (Lsm4)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     290647 (Lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     290647 (Lsm4)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    290647 (Lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 290647
NCBI-ProteinID: NP_001099543
RGD: 1306808
Ensembl: ENSRNOG00000019572
UniProt: D4A2C6 A6KA13
LinkDB
Position
16:complement(18789466..18795164)
AA seq 138 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQQKQQKGRGMGGAGRGVFGGRGRGGIP
GAGRGQPEKKPGRQAGKQ
NT seq 417 nt   +upstreamnt  +downstreamnt
atgcttcccttgtcgctgctgaagacagcccagaatcaccccatgctggtggagctgaag
aatggggagacctacaacgggcacctggtgagctgcgacaactggatgaacatcaacctt
cgagaagtgatctgcacatcgagggacggtgacaagttctggaggatgcccgagtgctac
atccgaggcagcaccatcaagtacctgcgtatcccggatgagatcattgacatggtgagg
gaagaggccgccaagggccgagggcgaggaggaccgcagcagcagaagcagcagaaaggc
cgaggcatgggtggcgctggcagaggtgtgtttggtggccggggccggggtggcatccct
ggtgcaggccgaggccagccggagaagaagccagggcggcaggcaggcaagcagtga

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