Rattus norvegicus (rat): 290905
Help
Entry
290905 CDS
T01003
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain precursor
KO
K06237
collagen type IV alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04382
Cornified envelope formation
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04820
Cytoskeleton in muscle cells
rno04926
Relaxin signaling pathway
rno04933
AGE-RAGE signaling pathway in diabetic complications
rno04974
Protein digestion and absorption
rno05146
Amoebiasis
rno05165
Human papillomavirus infection
rno05200
Pathways in cancer
rno05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
290905 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
290905 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
290905 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
290905 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
290905 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
290905 (Col4a1)
09158 Development and regeneration
04382 Cornified envelope formation
290905 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
290905 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
290905 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
290905 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
290905 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
290905 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
290905 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
290905 (Col4a1)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
290905 (Col4a1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
290905 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
290905
NCBI-ProteinID:
NP_001128481
RGD:
1307148
Ensembl:
ENSRNOG00000016281
UniProt:
F1MA59
LinkDB
All DBs
Position
16:84885597..84996482
Genome browser
AA seq
1669 aa
AA seq
DB search
MGPRLSVWLLLPLAALLLHEERSRAAAKGDCGGSGCGKCDCHGVKGQKGERGFPGLQGVI
GFPGMQGPEGPHGPPGQKGDAGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGI
PGAPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGEQGVSGPP
GVPGQAQVKEKGDFAPTGEKGQKGEPGFQGTPGYGEKGEPGKPGPRGKPGKDGEKGEKGS
PGFPGESGYPGLPGRQGPQGEKGEPGLPGPPGTVVGTRPLGEKGERGYPGSPGLRGEPGP
KGYPGSPGQPGPPGFAVPGQTGAPGFPGERGEKGERGSPGVSLPGPSGRDGAPGPPGPPG
PPGQPGHTNGIVECQPGPPGDQGPPGIPGQPGLTGEVGQKGQKGESCLACDTEGLRGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGSPGLIGQPGAKGEPGEIFFDMRLK
GDKGDPGFPGQPGMPGRAGTPGRDGHPGLPGPKGSPGSIGLKGERGPPGGVGFPGSRGDI
GPPGPPGVGPIGPIGEKGQAGLPGGPGSPGLPGPKGEAGKVVPLPGPPGAAGLPGSPGFP
GPQGDRGFPGTPGRPGNPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSPGRPGFNG
LPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTGPPGLQGI
RGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGAPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGIPGSPGLPGPKGSVGGMGLPG
SPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPGRPGDKGDQGLAGFPGSPGE
KGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGT
PGPTGPAGQKGEPGSDGIPGSAGEKGEQGLPGRGFPGFPGTKGDKGSKGEVGFPGLAGSP
GIPGAKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQGQPGLPGHPGPMGPPGFPG
IDGPKGDKGNPGWPGAPGAPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQKG
LPGLQGVKGDQGDQGIPGPKGLQGPPGPPGPYDVIKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcagcgtctggcttctgctgccgctcgccgcccttctgctccacgag
gagcgcagccgggccgctgcgaagggtgattgtggtggctctggctgtggaaaatgtgac
tgtcatggtgtgaagggacaaaagggagagagaggctttccagggttacaaggtgtcatt
ggatttcctgggatgcaaggacctgaggggccacatggaccaccaggacaaaagggtgat
gctggagaacctggacttcctggaacgaaagggacacgaggaccccctggagcagctggc
taccctgggaatcccggacttcctggtattcctggccaggatggtcctccaggtccccca
ggtatcccaggatgcaatggtacaaagggagagagagggccactcggtcctcctggcttg
cctggattcagcgggaatcctggaccaccggggttaccaggaatgaagggagatcccggt
gaaattctcggccatgttcctgggaccctgctgaaaggagagagaggatttcctggtatc
cctggggcgccgggctcaccagggttgccaggactccagggacctgtcggtcctccggga
tttactggaccaccgggtcctccaggccctcctggacctcctggagaaaaggggcagatg
ggatccagcttccaaggaccaaaaggcgacaagggagaacaaggggtcagtggtcccccg
ggagtacctggacaggcacaagttaaggaaaaaggagactttgccccaacaggagaaaag
ggtcagaaaggtgaacctggattccagggaacaccaggatatggagagaaaggtgaacct
ggcaagccaggacctcggggaaaacctggaaaagatggtgaaaaaggagaaaaggggagc
ccgggctttcctggtgaatccggatacccaggtcttccaggccggcagggccctcaggga
gagaagggtgaacctggacttccaggcccccctggaactgtggtaggcaccaggccattg
ggagagaaaggagagcgaggctacccgggatccccagggttaagaggagagcccggtcct
aaaggttaccctggatcgccaggccaaccaggccctccaggtttcgctgttccaggccag
actggtgctccgggcttcccaggtgaaagaggagaaaaaggtgaaaggggatctccaggt
gtgtctttaccaggaccaagtggaagagatggagccccagggcctcctggccctcctggc
ccccctgggcaaccaggccacacgaacggcattgtggagtgtcaacctggaccacctggg
gaccagggtcctccaggaattccaggacagccaggtttgacaggcgaagttggacagaaa
ggtcagaaaggagagagctgccttgcctgtgacacagaaggacttcgaggccccccaggg
ccacaggggcctccaggagagattggtttccctggacagccaggggctaaaggtgaccga
ggcctgccaggcagagatggtcttgaaggattgccgggtccacaaggttcaccggggctc
ataggccagcctggagctaagggagagcccggcgagatattttttgacatgcgactcaaa
ggtgacaaaggagacccaggttttccaggacagccagggatgccaggaagagcaggaact
ccgggaagagacggccacccaggactccccggacccaaaggctccccgggttcaatagga
ttgaagggagagagaggtccccctggaggagttggctttcctggtagtcgtggagacatt
ggccctcctggacccccaggagtcggtcccatcggtcccattggtgaaaaaggacaagca
ggccttcctgggggccccgggtccccaggtcttccaggtccaaagggtgaagcaggaaag
gttgtcccactccccggcccccctggagctgcaggacttccaggatcccctgggttccca
gggccacaaggtgaccgaggcttcccaggaaccccaggacggccaggcaacccaggagag
aagggtgctgtgggccaaccaggaattggatttcccgggcttcctggccccaaaggtgtt
gatggcttgcctggagagataggacgaccggggagtccaggtcgccctggatttaatggc
ttacctggcaacccaggaccgcaaggccaaaagggagaacctggcattgggcttccagga
ctcaaagggcagccaggtcttccaggtatccctggcacacccggagagaaaggcagcatc
gggggacctggcgttccaggagaacaggggttgactggccctcccggactccaggggatc
agaggtgacccaggacctcctggggttcaaggccctgcaggtccaccaggggttccagga
ataggaccacccggagctatgggccctcccggagggcaaggaccaccaggttcatcaggt
ccacctggagttaaaggagagaagggattccctggattcccaggactggatatgcctggc
cccaaaggagataaaggctctcaaggacttcctggcctcacaggacagtcagggctccct
ggcctccctggacagcaggggactcctggagttccagggttcccaggttctaaaggtgaa
atgggcgtcatgggaaccccgggacaaccaggctcaccaggaccagcaggcgccccaggg
ttacccggagagaaaggagaccatggctttccgggctcctcgggacccaggggcgaccct
ggcttcaaaggtgataaaggtgatgtcgggcttcctggcatgccaggatccatggagcac
gtggacatgggcagcatgaaggggcagaaaggagaccagggagagaaaggacaaattgga
cccactggtgataaaggttcccgaggagaccccggaacaccaggagtgcccgggaaggat
gggcaggcagggcaccctggacagccaggacctaaaggtgacccaggccttagtggaata
ccaggatcccctggacttcctggacccaaaggatcggttggaggaatgggcttgccaggt
tcgcccggagagaaaggcgttccgggcatccctggctcacagggtgtccctggctcacct
ggagagaaaggagctaagggagagaaagggcagtcaggtctccctggcattggaattcct
ggacggcctggtgacaagggagatcaggggcttgcaggtttcccaggcagccctggtgag
aagggagagaaaggcagtgccggaaccccagggatgccagggtccccaggcccaagaggc
tctccagggaacatcggccatccaggaagcccaggcctgcctggagaaaaaggagacaaa
ggcctcccaggactggatggtgttcccggtgtcaaaggagaagcaggtcttcctgggact
cctggccccacaggcccagctggccagaagggagaacctggcagtgatggaatcccgggg
tcggcaggagagaagggtgaacaaggtttgccaggaagaggcttcccaggcttccccggc
accaaaggagacaaaggttccaagggtgaagtgggtttccctggccttgccggaagtcct
gggattcctggagccaaaggcgagcaaggattcatgggtcctcccggccctcaaggacag
ccgggcttacctggcactcctggccaccctgtggaggggcccaaaggagaccgaggacct
cagggtcaacccggcctgccagggcatccgggacctatggggccaccagggttccctgga
atcgatgggccaaaaggtgacaagggaaatccaggttggccaggagctcctggggctcca
ggccctaagggagacccaggattccaaggcatgccgggcattggcggctctccagggatc
acaggttcaaagggagatatgggaccgcctggcgttccaggattccaaggtcagaaaggt
cttcctggcttgcagggagtgaagggagatcagggagatcaaggcatacccggccctaaa
ggtctccaaggtccccctgggcccccaggtccctacgatgtcatcaaaggagaaccaggg
ctcccaggtcctgagggtcctcctggtctcaaaggacttcaaggaccaccaggtccaaaa
ggacagcaaggtgtgacaggctccgtgggcttgcctggacctccaggtgtccctgggttt
gatggtgcccctggccagaaaggagagactggaccatttggaccacctggtccgagaggg
tttcctggtccaccaggccccgatgggctgccaggatccatgggtcccccgggtacccca
tctgtggaccatggcttccttgtgaccaggcatagtcagacaacagatgacccgctgtgt
cccccagggaccaaaattctttaccatgggtactctctgctctatgtccaaggaaacgag
cgggcccatggtcaggacttgggtacggctggcagctgtctgcgcaagttcagcaccatg
cccttcctcttctgcaacatcaacaacgtctgcaacttcgcctccaggaacgactactcc
tactggctgtccactccggagcccatgcccatgtccatggcacctatctctggggacaac
atccggcccttcattagcaggtgtgcagtttgcgaagcgcccgccatggtgatggcggtg
cacagtcagaccatccagatcccgcagtgccccaacggttggtcctcactgtggattggc
tattcctttgtgatgcacaccagcgctggtgctgaaggttctggccaagcccttgcatct
cccgggtcctgtctggaagagtttagaagtgccccattcatcgagtgccatggcagagga
acgtgcaattactacgcgaatgcttacagcttttggctcgccaccatagagagaagcgag
atgttcaagaagcccacgccgtccaccttgaaggcaggggagctgcgcacgcatgtcagc
cgctgccaagtgtgcatgagaagaacatag
DBGET
integrated database retrieval system
