Rattus norvegicus (rat): 291615
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Entry
291615 CDS
T01003
Symbol
Pabpc2
Name
(RefSeq) poly(A) binding protein, cytoplasmic 2
KO
K13126
polyadenylate-binding protein
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
291615 (Pabpc2)
09123 Folding, sorting and degradation
03018 RNA degradation
291615 (Pabpc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
291615 (Pabpc2)
03041 Spliceosome [BR:
rno03041
]
291615 (Pabpc2)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
291615 (Pabpc2)
mRNA cycle factors
Stress granule specific factors
291615 (Pabpc2)
Spliceosome [BR:
rno03041
]
Complex C
Other components
Complex C specific factors
291615 (Pabpc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
HATPase_c
Motif
Other DBs
NCBI-GeneID:
291615
NCBI-ProteinID:
NP_001099621
RGD:
1310759
UniProt:
A6J3I1
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All DBs
Position
18:31905327..31907595
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AA seq
630 aa
AA seq
DB search
MNSSDPGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFE
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFS
AFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKERE
AELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKN
LDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYIQRMASVRSGPNSLINAYQPAPSGYSVAAVPQTQNCAP
CCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAPKSSFTTVRPSSSHVPQVMAAQRI
TNTSAQTTGQRPALASSPATTPVRSIPQYKYATGVRNSQQHLNAQLVQQPSVCIQGQEPW
TASTLGTAPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSR
AQEAVSALQAHQANEAAQKAAGSTSGVPTV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaactccagcgacccaggctgccccatggcctcgctctatgtgggggacctgcaccct
gatgtgacagaggcgatgctctatgagaagttcagctccgccgggcccatactttccatc
cgggtatacagggatgtgatcacacgtcgctccctgggctatgcttccgtgaactttgag
cagcctgctgatgcagagcgtgctttggacaccatgaattttgatgtcatcaagggcaag
ccagtccgcatcatgtggtctcagcgtgatccatcacttcgcaggagtggagtaggcaac
gtgttcattaaaaatttaaacaagaccattgacaataaagcgctatatgatacattctct
gcttttggcaatatcctttcctgcaaggtggtctgcgatgagaatggctcgaagggccat
ggatttgtacattttgagacagaggaggcagcggaaagagccatcgagaaaatgaacggg
atgcttctgaatgaccgcaaagtgtttgttggacagtttaagtctcggaaagaacgagaa
gcagagcttggaacgaggaccaaggagtttaccaacgtttacatcaagaactttggggac
cgcatggatgataagaccctgaatggcctcttcggcaggtttggacaggtcctaagtgtg
aaagtcatgaccgacgaaggtggaaaatcaaaaggattcgggttcgtcagctttgaaagg
cacgaagatgcgcagaaagcggtggatgagatgaatgggaaggaactcaatggaaaacac
atttatgtgggcccagctcagaaaaaggtggaccgtcacatagaacttaagcgcaaattt
gagcaggtgacccaagacaggggcatcagataccagggcattaacctttatgtgaaaaat
ctcgatgatggtattgatgatgaacgtcttcagaaagaattttctccgtttggaacaatc
accagtacaaaggttatgacagagggtggtcgcagtaaaggattcggttttgtgtgtttc
tcctccccagaagaagccacaaaagctgtttcagaaatgaatggtagaattgtggccacg
aaaccactttatgtagctttagcccagcgcaaagaagaacgtcaggctcatctcactaac
caatatattcaaagaatggcaagtgtccgatctgggccgaactctcttatcaacgcttac
caaccagcaccttctggctactccgtggctgctgtcccacaaactcagaactgtgcccca
tgctgccctagccaaattgttcaaccaagtccaagtactcgctggactgctcagggggcc
cggcctcatccattccccaacgtgtctggtgctagccaccctgctgctcctaaatcgtcg
tttactacggtaagaccaagttcttcacatgttcctcaagtcatggcagcacagcgcatc
actaacacatcagcacagacaacgggtcaacgtcctgccctagcctcttcacctgcaact
actcctgttcgctcgattccacagtataagtatgccacaggagtccggaactcccagcaa
catcttaatgcccagctggtgcaacagccttctgtttgcatacagggccaggaaccttgg
actgcttccacattaggaactgctcctcaagagcaaaagcaaatgttgggtgaaaggtta
tttcctctcattcaagccatgcacccgaccctggctggtaagatcacgggcatgttgctg
gagattgataactcggaaccacttcatatgctcgactctccagagtctctgtgttctaga
gctcaggaagccgtgtcggcactccaggcccaccaagctaacgaggctgcccagaaagct
gctggcagtacctctggtgtcccaactgtttaa
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