Rattus norvegicus (rat): 291841
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Entry
291841 CDS
T01003
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
291841 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
291841 (Cnot1)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
291841 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
291841 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
291841
NCBI-ProteinID:
NP_001128312
RGD:
1308009
Ensembl:
ENSRNOG00000012271
UniProt:
A6JXZ2
LinkDB
All DBs
Position
19:9261290..9352636
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtaaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatcctttgcac
taccagaagagtttaaaacctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaattcttctagcccagat
ctcaggggatttgctgcccagtttattaagcagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctgcacctcctgctctcccacctcctctttgggcagaagggggcctttggagtcgggcag
gagcagatagacgcctttctcaagacgctgcgcagagattttccccaagagcgttgtcct
gtggtgcttgcaccactcctataccctgaaaaacgggacattctaatggacaggattctg
cctgactctggaggggtagctaagaccatgatggagagctctctggctgatttcatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtgacagctgcccaggttgccagggtcttgggaatgatggctcggact
cactcaggattaacagatggtattccattacagagcatctctgctcccggcagtgggatc
tggagtgatgggaaagataaaagcgagggggcacaggcacacacgtggaatgtagaggtt
ttgatcgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgatagcaaagggcttcacaatgtggtgtatggc
attcagaggggtctgggcatggaagtgttcccagtggactttatatataggccctggaaa
catgcggaaggccagctctccttcatccagcattccctgataaacccagaagtcttctgc
tttgccgactacccctgtcacactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgagcaagtgaaacaactcttcagcttccctatcaaacactgt
ccagacatgttggtattggccttacttcaaatcaacacctcctggcacaccctacgccat
gaactcatttctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccctgtcgatgctgctgaacggcactccatttgcc
tttgttattgaccttgctgcactcgcttctcggcgtgaatacctcaaacttgacaagtgg
ctaacagataagataagagagcatggggagccttttatacaagcatgtatgactttttta
aaaagaaggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaacactagcgacaatgttggcctgtctacaggcttgtgcaggg
agtgtttctcaggagttatccgagactatcctcaccatggtagccaattgcagtaatgta
atgaataaggccagacagccaccacctggagttatgcccaaaggccgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagcatgcagggttttcctccaaatttg
ggttctgcgttcagtacacctcagtcaccagcaaaagcatttccaccactttcaacccca
aatcaaacaacggcattcagtggtattgggggactttcatcacagcttccagtaggtggt
cttggcacaggaagcctgactggcataggaactggggcccttggacttcctgcagtgaac
agtgatccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaatagatgacgaagcaaacagctatttccagcgaatatataatcacccccca
catccaaccatgtctgttgatgaggtactagaaatgctacagagatttaaagactctaca
ataaaaagggagcgagaagtatttaactgtatgctaaggaacttatttgaagaataccgg
ttttttccccagtaccctgataaagaattacatataacagcctgcttgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttgggtccaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgtcaacacctggcttctatcagtcac
tttatgcagttcccacaccatttgcaggagtacatcgaatatggacaacagtctcgagat
cctcctgtgaaaatgcagggctctatcactacccctggaagtattgcactggctcaggcc
caggcccaggcccaggttccagcaaaagcccctcttgcgggtcaggttaacacaatggtg
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaagccaacaggagtc
agctttaagaaagatgtgccaccttccataaacacaacgaatatcgatacactgcttgtg
gccacagatcaaactgagaggattgtggagcccccagagaatattcaagagaaaattgct
tttattttcaacaatctctcacagtcaaatatgacacaaaaggttgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcttgtattcaaactttcttgatacattgaagaatcctgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacttctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggttagga
atgatcacattagctaaaaataaacccatcttacacacggacttggatgtgaaatccctt
ctgttagaggcttacgttaaaggacaacaggagctgctttatgtagtgccctttgttgcc
aaagttctagagtccagcattcgtagtctggtttttagaccacccaatccctggacgatg
gccattatgaatgtcttggcagagctgcaccaggagcatgacctgaagttaaacttgaag
tttgagattgaggtgctctgtaagaacctcgcattagacatcaacgagctcaaacctgga
aacctgctgaaagacaaagatcgcctgaagaatttagatgaacagctctctgctccaaag
aaagatgtcaaacagccagaagagcttcctgccatcacaacaacaacgacttctacaaca
ccagctaccagcactacgtgcacagccaccgttccgccacagccgcagtacagctaccat
gacattaatgtctattctctagcaggcctggcacctcacattactctaaaccctacaatc
cctttatttcaggctcatccacagttgaagcagtgtgtgcgacaagcaattgaacgagct
gtccaggagctagtccaccccgtggtggatcggtccattaagattgctatgactacatgt
gaacagatagttagaaaggactttgctctggattctgaagaatctagaatgagaatagca
gctcatcacatgatgcggaacttgacagctggaatggctatgattacttgcagggaacct
ttactgatgagcatatctaccaacctcaaaaacagcttcgcttcagctctccgtactgcg
tccccacaacaaagggagatgatggaccaggccgccgctcagttagctcaggacaattgt
gaattagcttgctgctttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaaacacgctcggcaagaaggccgtcggtac
tgtgatcctgttgtgcttacataccaagccgaacggatgcccgagcagatcaggctgaaa
gttggtggtgtggacccaaagcagctagccgtctatgaagagtttgcgcgaaatgtgcct
ggcttcttacctacaaatgacttaagtcagcctacagggtttttagcacagcccatgaag
caagcttgggcaacagatgacgtcgctcagatttatgataagtgtattacagaactggag
cagcacctgcatgccatcccaccaactttggccatgaatccccaagcccaggctctacga
agtctcttagaggttgtagtattgtctcggaattctcgggatgctatagctgctcttgga
ttactacagaaggctgtggagggcctattggatgccacaagtggtgctgacgctgacctg
ctgctgcgctacagggagtgccacctgctggtgctgaaagggctgcaggacggcagggcg
tacgggtctccatggtgcaacaagcagatcacaaggtgcctaatcgaatgccgagatgaa
tacaagtataatgtggaggccgtggagttgttaatccgaaaccatctggtcaacatgcag
cagtatgaccttcatcttgctcagtcgatggagaatggcttaaactacatggccgtggca
tttgctatgcaactggtaaaaattctgctggtggacgaaaggagtgttgcccatattact
gaggcagatctgttccacaccattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtggtgagatctaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctgtaccattcagcagcagctggccgtgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccaacaaggaatacttaaaactgatgacctcataacaaggttttttcga
ctttgcactgaaatgtgtgttgaaatcagttaccgtgctcaggcagagcagcagcacaat
cctgctgccaaccccaccatgatccgggccaagtgttaccacaacctggatgcctttgtc
cgcctcattgcactgttagtgaagcactctggggaggccaccaacactgtcacaaagatc
aacctgcttaataaggttctcggtatagtagtgggagttctcctgcaggaccacgatgtc
cggcagagcgagtttcagcagcttccctaccataggattttcatcatgctgctgctggag
ctcaatgcacctgagcacgtgttggagaccatcaatttccagacccttacagctttctgc
aatacattccacatcttgaggcctaccaaagctcctggctttgtatatgcttggcttgaa
ttgatctcgcatcggatctttattgcaagaatgctggcacacacgccacagcagaagggg
tggcctatgtatgcacagctgttgattgatttattcaaatatttagcacctttccttaga
aatgtggaactcactaaacctatgcaaatcctctacaagggtactctgagagtgctgcta
gttcttttgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atccctcctaattgtatccagttaagaaatttgatcctgagtgccttcccaagaaatatg
aggctcccagacccattcacgcctaatctgaaggtggacatgctgagcgaaattaacatt
gcacctcggatcctcaccaacttcactggagtgatgccacctcagttcaaaaaagatttg
gattcttatcttaaaactcgatcaccggtcacttttctgtctgatctgcgtagtaaccta
caggtatctaatgaacctgggaatcgctacaacctccagcttatcaatgcattggtgctc
tatgtagggactcaggccatcgcgcacatccacaacaagggcagcacgccttcaatgagc
accatcacccactcagcacacatggacatcttccagaatctggctgtggacctagatacc
gagggccggtatctctttttaaacgcaattgcaaaccagctgcggtacccaaacagccac
acgcactacttcagctgcaccatgctgtacctttttgccgaggcgaacactgaggcaatc
caggaacagatcacaagggttctcttggaacggttgattgtaaataggccgcatccttgg
ggtcttctcatcaccttcattgagctgattaaaaacccagcatttaagttctggaaccat
gaatttgtacactgtgccccagagatcgaaaagctgttccagtctgttgcgcagtgctgc
atgggacagaagcaggctcagcaagtgatggaggggaccggtgccagttag
DBGET
integrated database retrieval system