Rattus norvegicus (rat): 292007
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Entry
292007 CDS
T01003
Symbol
Dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
292007 (Dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
292007 (Dhx38)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
292007 (Dhx38)
Spliceosome [BR:
rno03041
]
Complex C
Other components
Step II factors
292007 (Dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
292007
NCBI-ProteinID:
NP_001386123
RGD:
1310345
Ensembl:
ENSRNOG00000014619
LinkDB
All DBs
Position
19:complement(54422418..54439434)
Genome browser
AA seq
1227 aa
AA seq
DB search
MEDAGEDASIHRLEGTNLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQKDAEEDGDEQAGRSSRRDRHYRSARVETPSH
PGGVSEEFWERSRQRERDRREHGVYASSKEDKDRKKEKSRDRDHDRKRDRDERDRSRHSS
RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWETPSPTPSYR
DSERSHRPSTRDRDRSVRSKSSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGIAFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERRKAQHKHWELAGTKLGDIMG
VKKEEEPDKAMTEDGKVDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHQDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDADKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgctggtgaggacgcctccatccatcgcttggaaggcaccaacttggactct
caggttggtggccttatttgcaagaccaaaagtgcagccagtgagcagcatgtcttcaaa
gcccctgctcctcgcccttcattgctgggactggacttactggcgtccctgaaacggagg
gagcgagaggagaaggatgatggggaggacaagaaaaagtccagaatctcttcctacaaa
gactgggaggagagtaaggatgaccagaaggatgccgaggaggatggcgatgagcaggct
ggccgaagtagccggagagacaggcactaccgatctgctcgggtagagactccatcccac
cccgggggtgtgagtgaagagttttgggaacgcagtaggcagagagagcgggatcggagg
gagcatggagtctacgcctcatccaaagaagacaaggatcggaagaaggagaaatcccgg
gatcgagaccatgaccgcaagagagacagagatgagcgggacagaagtaggcacagcagc
agatcagaacgagacggaggctcagagcgcagcagcagaagaaatgaaccagagagtcct
cgacaccgcccaaaagatgcagccaccccttcaaggtccacctgggaggaggaggacagt
ggctatggctcttcaaggcgctctcagtgggaaacaccctccccaacaccttcctatcgg
gactctgagcggagtcatcggccgtccacacgagatcgagacaggtctgtgaggagcaag
tcctcagatgacacaccactgccgaccccctcctataagtacaacgagtgggctgatgat
agaagacacttggggtctaccccacgtctgtccaggggccgaggaagacgtgaggatggt
gaagaagggattgcatttgacacggaggaggagcggcagcagtgggaggacgaccagagg
caagcagaccgggattggtacatgatggacgagggctatgatgagttccacaaccctctg
gcttattcctctgaggactacgtgaggcggcgggagcagcacctgcacaaacagaagcag
aagcgcatttcagcacagcgcaggcagatcaatgaggataatgagcgttgggagactaac
cggatgctcaccagcggggtggtccatcggctggaggtggatgaggactttgaagaggac
aacgcggccaaggtgcatctgatggtgcacaacctggtgcctccctttctggatggacgg
attgttttcaccaagcagccggagcctgtgatcccagtgaaggatgccacctcagacctg
gccattattgctcggaaaggcagccagacggtccgcaagcacagggaacagaaagaacgg
agaaaggctcagcacaaacactgggaactggcagggaccaaactaggagacataatgggt
gtcaaaaaagaagaggagccagataaagctatgactgaagatgggaaagtggactacagg
acagagcagaagtttgcagatcacatgaaggagaaaagtgaggccagcagtgagtttgcg
aagaagaagtcgatcctggagcagaggcaatacctgcccatctttgctgtacagcaggaa
ctcctcaccatcatcagagacaacagcattgtgatcgtggtcggggagacggggagtggc
aagaccactcagctgacccagtacttgcatcaagatgggtacacggactatgggatgatc
gggtgcacacagccccggcgtgtggctgccatgtcagtggccaagagagtcagtgaagag
atggggggaaaccttggagaagaggtgggttatgccattcgctttgaagactgcacttct
gaaaacaccttgatcaaatacatgaccgatgggatcctgctccgagagtccctgcgggag
gctgacctagaccactacagcgccatcatcatggatgaggcccatgagcgctccctcaac
accgacgtgctctttgggctgctccgggaggttgtggctcgacgctcagacctgaagctc
attgtcacctcagctactatggatgcagacaaatttgctgccttctttgggaatgtaccc
atcttccacatccctgggcgaacttttcctgttgacatcctcttcagcaagaccccacag
gaggattatgtggaggccgcagtgaagcagtccttgcaggtgcacctgtctggggcccct
ggagacatccttatcttcatgcctggccaagaggacattgaggtgacgtctgaccagatc
gtagagcacctagaggagctggagaacgcgcctgccttggctgtgctgcccatctactcc
cagctgccgtctgaccttcaggcaaaaatcttccagaaggctcccgatggcgtccggaag
tgcatcgttgctaccaacattgctgagacgtctctgactgttgacggcatcatgtttgtc
atcgactctggctactgcaagttaaaggtcttcaaccccaggatcggcatggatgctctg
cagatctaccccattagccaggccaatgccaaccagaggtcagggagagctggcaggacg
ggcccaggtcagtgtttcaggctctacacacagagcgcttacaagaatgagctcctgact
accactgtgcctgagatccagaggaccaaccttgccaacgtggtgctgctgctcaagtcc
ctgggggtgcaggacctgctgcagttccacttcatggatccacccccagaggacaacatg
ctcaactccatgtaccagctgtggatcctcggagccctggataacacaggtggtctcact
tccacggggcggctgatggtggagttcccactggacccggctctctccaagatgctcatc
gtgtcttgtgacatgggctgcagctccgagatcctgctcatcgtctccatgctctccgtc
cctgccatcttctacaggcccaagggcagagaggaggagagcgatcagatccgggagaag
tttgctgtccctgagagtgatcacctgacctacctgaacgtctacctgcagtggaagaac
aacaattactccaccatttggtgcaacgaccacttcatccacgccaaggccatgcggaag
gtccgggaggtgcgggcccagctcaaggatatcatggtgcagcagcggatgagcctggcc
tcatgtggcactgactgggacattgtcaggaagtgcatctgtgctgcctatttccaccag
gcagccaagctcaagggcattggggagtatgtgaacatccgtacagggatgccctgccac
ttacaccccaccagctccctcttcggaatgggttacacccctgactacattgtatatcac
gagctggtcatgaccaccaaggagtacatgcagtgtgtgaccgccgtggatggagagtgg
ctggcggagctgggccccatgttctacagtgtgaaacaggcaggcaagtctcggcaggag
aatcgtcgtcgggctaaagaggaggcctctgccatggaagaggaaatggccctagctgag
gagcagctgcgcgcccggcggcaggagcaggagaagcgcagcccgctgggcagtgtcagg
tctacaaagatctacactccaggacggaaagaacagggggaacccatgacacctcgccgc
acaccagcccgctttggactgtga
DBGET
integrated database retrieval system
