Rattus norvegicus (rat): 292019
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Entry
292019 CDS
T01003
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
292019 (Sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
292019 (Sf3b3)
03041 Spliceosome [BR:
rno03041
]
292019 (Sf3b3)
03036 Chromosome and associated proteins [BR:
rno03036
]
292019 (Sf3b3)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
292019 (Sf3b3)
Spliceosome [BR:
rno03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
292019 (Sf3b3)
Complex B
292019 (Sf3b3)
Complex C
U2 SnRNP specific factors
292019 (Sf3b3)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
292019 (Sf3b3)
TFTC complex
292019 (Sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
292019
NCBI-ProteinID:
NP_001099657
RGD:
1311636
Ensembl:
ENSRNOG00000017724
UniProt:
B5DF12
E9PT66
LinkDB
All DBs
Position
19:complement(55692124..55729640)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacttgaccttacagcgggccactggcatcagctttgccatccatggc
aacttctctggaaccaaacaacaggaaattgtcgtttcccgtgggaagattttggagtta
cttcgcccagatcctaacactggcaaagtgcatacccttctcactgttgaagtttttggt
gttatccggtcacttatggcatttaggctaacaggtggcaccaaagactacattgtagtt
ggcagtgactcaggccgaattgttatcttggaataccagccatcaaagaatatgtttgag
aaaattcaccaagaaactttcggcaaaagtggatgtcgccgtattgttcctggccagttc
ttagccgtggatcccaaaggaagagctgttatgattagtgcgattgagaagcagaaattg
gtgtatatcttgaacagagacgctgcagcccgacttaccatttcatctcccctggaggcc
cacaaagcaaacactctagtgtaccatgtggttggagtagatgtgggatttgaaaatcct
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaacaggggaagca
gcagccaatacccagcagacacttactttctatgaattggaccttggtttaaatcacgtg
gttcggaaatacagtgaaccgttggaggaacatggcaacttccttattacagttcctgga
gggtcagatggtccaagtggagtgctgatctgctctgagaattatatcacctacaagaac
tttggtgaccagccagacatccgatgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtttgctctgccacccataagaccaagtccatgttcttc
tttttggcccaaacggagcagggagatatctttaagatcactttggagacagatgaagat
atggtaactgagatccgcctcaagtattttgatactgttcctgttgctgctgctatgtgt
gtgcttaaaacaggcttcctttttgtggcatcagaatttggaaatcattacttgtatcaa
attgcccatcttggagatgatgatgaagagcctgagttttcatctgccatgcctttagaa
gaaggagacacattcttctttcagccgagaccactcaaaaatctcgtgctggtggatgaa
ctggacagcctctctcctattctcttttgccagatagctgatttggccaatgaagacact
ccacagctgtatgtagcctgtggtaggggaccccggtcgtctctgagagtcttaagacat
ggacttgaggtgtcggaaatggctgtttctgagctccctggtaaccccaatgctgtctgg
actgtccgtcggcacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gccacgctggtgctgtccatcggagagactgtggaagaagtgacagactccgggttcttg
ggtaccactccaaccttgtcctgttccttattgggagatgacgcgttggtgcaggtgtat
ccagatggcattcgacacatccgagcagacaagagagtcaatgagtggaagactcctggc
aagaagacaattgtgaagtgtgcagtgaaccagcgacaagtggtgatcgccttgactggg
ggagagctggtctatttcgagatggatccttcaggacagttgaatgagtacacggagcgg
aaagaaatgtcagcagatgtggtgtgcatgagtctggccaacgtaccccctggagaacag
cggtctcggttcctggctgtggggctggtggacaacactgtcagaatcatctcccttgac
ccatcagactgtttgcagcctctgagtatgcaggctctcccagcccagcctgagtctctg
tgtattgtggaaatgggtgggaccgagaaacaagatgagctgggtgagaggggctctatc
ggcttcctgtacctgaacattggactccagaacggtgtgctgctgaggactgtcctagac
cctgttactggggacctgtctgacacccgcactaggtatctggggtcccgtcctgtgaag
ctctttcgggttcggatgcaaggccaggaggctgttctggctatgtctagtcgctcatgg
ctgagctactcttaccagtctcgattccatctcacccctctgtcttatgagaccctggaa
tttgcatcgggctttgcctctgaacagtgtcctgaaggcatcgttgccatctccaccaac
actttgaggattttggcactagagaagcttggcgctgtcttcaatcaagtggcctttcct
ttgcagtacacacccaggaagtttgtcatccaccctgagagtaacaaccttatcatcata
gagacggatcacaatgcctacactgaggctacaaaagctcagagaaagcagcagatggct
gaggaaatggtagaagcagcaggggaggatgaacgggagctggctgcagagatggcagcc
gcgttcctcaatgaaaacctcccagaatccattttcggagctcccaaggctggcaatggg
cagtgggcctctgtgattcgggtaatgaaccctatccaggggaatacactagaccttgtc
cagctggagcagaatgaggcagcctttagtgtggcagtgtgtaggttctccaacactggt
gaagactggtatgtgctggttggtgttgctaaggacttgatcctgagccctcggtctgtg
gcagggggctttgtgtatacatacaagcttgtgaacaatggggaaaagttggagtttttg
cacaagactccagtggaagaagtccctgctgccattgccccattccaggggagggtactg
attggtgtggggaaacttttacgagtctatgacctggggaagaagaagttacttcgaaag
tgtgagaataagcatattgccaactacatatcagggatccagacaattggtcacagggta
atcgtgtctgatgtccaggaaagtttcatctgggttcgctacaagcgtaatgagaaccag
ctcattatctttgctgatgacacctatcccagatgggtcaccactgccagccttctcgac
tatgatactgtggctggggcagacaagtttggcaacatttgtgtggtgaggctcccacct
aacaccaacgatgaggtggatgaagatcccactggaaacaaagccctgtgggaccggggc
ttgctcaatggggcttcacagaaggcagaggtcatcatgaactaccacgttggggagaca
gtgctgtcgttgcagaagaccacactgatccctggaggctcagaatcacttgtctatacc
actttatctggaggaattggcatccttgtccctttcacgtctcatgaggaccacgacttt
ttccagcatgttgagatgcacctgcggtctgagcatcctcctctctgtggacgggaccac
ctcagctttcgttcttattatttccctgttaagaatgtgattgatggagacctttgtgag
cagttcaactccatggagcccaacaagcagaaaaatgtctctgaagagctggaccgaacc
ccacctgaagtgtccaagaagcttgaggatattcggacccgctatgctttctga
DBGET
integrated database retrieval system
