Rattus norvegicus (rat): 293408
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Entry
293408 CDS
T01003
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
rno05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
293408 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
293408 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
293408 (Hbs1l)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
293408 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
AAA_29
Motif
Other DBs
NCBI-GeneID:
293408
NCBI-ProteinID:
NP_001011934
RGD:
1308509
Ensembl:
ENSRNOG00000014531
UniProt:
Q6AXM7
LinkDB
All DBs
Position
1:17912139..17989651
Genome browser
AA seq
679 aa
AA seq
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MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLKES
SNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG
VQTLKEKSERAVCAGQPSKVISRSSQSESEIVPKVAKMTVSGKKQTMGFEVPGLPSEENG
HNVRAPYKGPPGDDVSIASPNVPETGTPKSTAHPPSLQTSEELGCTPTPLRKSGKLRQQI
DVKAGLEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKA
SFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVA
VLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEITGKL
GHFLKQAGFKESDVAFIPTSGLSGENLTSRSQSSDLTKWYKGLCLLEQIDSFKPPQRSID
KPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAA
AGDHVSLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNIEVPITKGFPVLLHYQ
TVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRF
MLRYGGSTVAAGVVTEIKE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcggaacgtccggggctataactatgatgaagattttgaagatgatgac
ttgtacggccagtctgtggaggatgactattgcatctcaccatcaacagctgctcagttc
atttactcacgacgtgacaaccctgaagaagaatatggttatgaagatctgaaagagtct
tctaattctcttttgaatcaccaattaagtgaaatcgaccaagctcgcctttattcatgc
cttgatcacatgagagaggtactgggggacgccgtgcctgatgacatactgactgaggca
attctgaaacataagtttgatgtgcagaaggcgttgtcggtggttctggaacaagatggt
gtgcagactttgaaggagaagagtgagcgagcagtgtgtgcaggacagccttcaaaagtt
atatctcggtcatcccagagtgaatctgaaattgtgccaaaagttgcaaagatgactgtg
tccgggaagaagcagaccatgggatttgaagtgcccggcttaccttctgaggaaaatgga
cacaatgtgcgcgctccttacaaagggcctcctggagatgatgtgagcattgcctctcct
aatgttcctgagaccggcactccgaaatccaccgcccaccctccctcccttcagacgtca
gaagagctgggctgcactccgacaccactgaggaagtctggcaagctgaggcagcagata
gacgtgaaagcgggattggagaagcggcagggcgggaagcagctcctcaacttagtggtc
attggtcatgttgatgctgggaaaagtactctgatgggccatatgctttatcttctgggt
aatgtaaacaaaagaactatgcataagtatgagcaagaatctaaaaaggctggcaaggct
tcatttgcatatgcatgggtcttggatgaaactggagaagaaagggaaaggggagtaaca
atggatgttggcatgacgaagtttgaaaccacaaccaaagttgttaccttaatggatgct
ccaggccataaggatttcattccaaacatgatcacaggagcagcccaggctgacgtggca
gtcttggtcgttgatgccagcaggggagaatttgaagctggatttgagacgggaggacag
acccgagagcatggccttttggtccgatctcttggagtgacgcagcttgctgtggctgtc
aataagatggaccaggtaaattggcaacaagaaagatttcaagagattactggaaaactt
gggcactttctcaagcaagcaggttttaaggagagtgatgtagcttttatcccaaccagc
ggtctgagtggcgagaatttaacttcaaggtcacagtccagtgacctcacgaagtggtac
aaagggctctgcttattggagcagattgattccttcaagccccctcagcgttccattgac
aaacctttcaggttatgtgtgtctgatgtcttcaaagatcaaggatctggcttttgtgtg
actggtaagattgaagccggctatgtccagactggtgaccgactgttagccatgccgccc
aatgaaacctgtactgccaaaggaatcactctgcacgacgaacctgtcgattgggcagca
gcaggagatcacgttagtcttactttggttgggatggatatcatcaaaatcaatgttggc
tgcatattttgtggacccaaagaacccattaaagcttgcactcgcttcagagcccggatt
ctcatcttcaatattgaagttcccatcactaaaggctttcctgtgctgttacactaccaa
accgtcagtgagcctgctgttattaagcgattgattagtgtcctaaacaaaagtaccggt
gaagtcacaaagaagaagcccaagttgttgaccaagggccagaatgccttggtagagctg
cagacacaaagaccagtggctctcgagctctacaaagacttcaaggagctggggcggttt
atgctgcgttatggtggctccacggtagctgctggcgttgtcactgagataaaagagtga
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