Rattus norvegicus (rat): 29393
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Entry
29393 CDS
T01003
Symbol
Col1a1
Name
(RefSeq) collagen alpha-1(I) chain precursor
KO
K06236
collagen type I alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04518
Integrin signaling
rno04611
Platelet activation
rno04820
Cytoskeleton in muscle cells
rno04926
Relaxin signaling pathway
rno04933
AGE-RAGE signaling pathway in diabetic complications
rno04974
Protein digestion and absorption
rno05146
Amoebiasis
rno05165
Human papillomavirus infection
rno05205
Proteoglycans in cancer
rno05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
29393 (Col1a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
29393 (Col1a1)
04518 Integrin signaling
29393 (Col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
29393 (Col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
29393 (Col1a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
29393 (Col1a1)
09152 Endocrine system
04926 Relaxin signaling pathway
29393 (Col1a1)
09154 Digestive system
04974 Protein digestion and absorption
29393 (Col1a1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
29393 (Col1a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
29393 (Col1a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
29393 (Col1a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
29393 (Col1a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
29393 (Col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
29393 (Col1a1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
29393 (Col1a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Fn1_2
Motif
Other DBs
NCBI-GeneID:
29393
NCBI-ProteinID:
NP_445756
RGD:
61817
Ensembl:
ENSRNOG00000003897
UniProt:
P02454
Structure
PDB
PDBj
LinkDB
All DBs
Position
10:80380458..80397461
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AA seq
1453 aa
AA seq
DB search
MFSFVDLRLLLLLGATALLTHGQEDIPEVSCIHNGLRVPNGETWKPDVCLICICHNGTAV
CDGVLCKEDLDCPNPQKREGECCPFCPEEYVSPDAEVIGVEGPKGDPGPQGPRGPVGPPG
QDGIPGQPGLPGPPGPPGPPGPPGLGGNFASQMSYGYDEKSAGVSVPGPMGPSGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGDTGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPPGSAGARGNDGAVGAAGPPGPTGPTGPPGFPGAAGAKGEAGPQGARGSEGPQGVRG
EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPG
SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPAGPPGARGQAGVMGFPGPKGTAGEPGKAGERGVPGPPGAVGPAG
KDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG
PSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPG
ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGETGPSGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPPGPAGPAGPPG
PIGNVGAPGPKGSRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRG
ETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAPG
AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPAGARGPAGPQG
PRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGSPG
KDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKSQD
GGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKS
GEYWIDPNQGCNLDAIKVYCNMETGQTCVFPTQPSVPQKNWYISPNPKEKKHVWFGESMT
DGFQFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKSLLLQ
GSNEIELRGEGNSRFTYSTLVDGCTSHTGTWGKTVIEYKTTKTSRLPIIDVAPLDIGAPD
QEFGMDIGPACFV
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttaggggccactgccctcctgacg
catggccaagaagacatccctgaagtcagctgcatacacaatggcctaagggtccctaat
ggtgagacgtggaaacctgatgtatgcttgatctgtatctgccacaatggcacggctgtg
tgcgatggcgtgctatgcaaagaagacttggactgtcccaacccccaaaaacgggagggc
gagtgctgtcctttctgcccagaagaatatgtatcaccagacgcagaagtcataggagtc
gagggacccaagggagaccctggcccccaaggcccacggggacctgttggcccccctgga
caagatggcatccctggacagcctggacttcctggtcctcctggtccccccggccccccc
ggaccccctggtcttggaggaaactttgcttcccagatgtcctatggctatgatgagaaa
tcagctggagtttccgtgcctggccccatgggtccttctggtcctcgtggtctccctggc
ccccctggtgcacctggtcctcaaggtttccaaggcccccctggtgaacctggcgagcct
ggcgcttcaggtccaatgggtccccgaggtccccctggccctcctggcaagaacggagat
gatggggaagctggtaagcctggccgccctggtgagcgtggacctcctggacctcagggt
gctcgtggattgcctggaacagctggcctccccggaatgaagggacacagaggtttcagt
ggtttggatggtgccaaaggagatactggtcctgctggtcctaagggagagcctggcagt
cctggtgaaaatggagctcccggccagatgggtccccgaggtctgcctggtgagagaggt
cgccctggaccccctggcagtgctggtgctcgtggtaacgatggtgctgtcggtgcagct
gggccccccggtcccaccggccctactggccctcctggcttccctggtgcagctggtgct
aagggtgaagctggtccccagggagcccgaggctctgaaggtccccagggtgtgcgtggt
gagcccggaccccctggccctgctggtgctgctggtcctgctggaaaccctggtgctgat
ggacaacctggtgctaaaggtgccaatggtgctcctggtattgctggtgctcctggcttc
cctggtgcccgaggcccctctggacctcagggccccagcggcgctcctggtcccaaaggc
aacagtggtgaacctggtgcccctggcaacaaaggagacactggtgccaaaggagaaccc
ggccctgctggagttcaaggtccccctggccctgctggagaagaaggaaaacgaggagcc
cgtggtgagcctggacctagcggcctgcccggacctcctggcgagcgcggtggacctggt
agccgtggtttccctggtgctgatggtgttgctggccccaagggtcctgctggtgaacgt
ggttctcctggccctgctggtcccaaaggttctcctggtgaagctggtcgccctggtgaa
gctggtctccctggtgccaagggtctcactggcagtcctggcagccctggtcctgatggc
aaaaccggcccccctggtcccgctggtcaagatggtcgccctggacccgcaggtcctcct
ggagcccgtggacaggctggtgtgatgggattccctggacctaagggtactgctggagaa
cctggaaaggctggagaacgaggtgtccccggaccccctggcgctgttggtcccgctggc
aaagatggcgaagctggagctcaaggagcccccggccctgctggtcctgctggtgagaga
ggtgaacaaggtcccgctggctcccctggattccagggtcttcctggtcccgctggtcct
cctggtgaagcaggcaagcctggtgaacagggtgttcctggagaccttggtgcccctgga
ccctctggcgcaagaggcgagagaggtttccctggtgaacgtggtgtacaaggtccccca
ggtcctgctggtccccgaggaaacaatggtgcccccggcaacgatggtgccaagggtgat
actggtgcccccggagctcctggtagccagggtgcccccggtcttcagggaatgcctggt
gaacgtggtgcagctggtcttccaggtcctaagggtgacagaggtgatgctggtcccaaa
ggtgctgatggttctcctggcaaagatggcgtccgtggtctgactggtcccattggtcct
cctggccctgctggtgcccctggtgacaagggtgaaactggtcccagtggtcctgctggc
cccaccggagcccgtggtgcccccggagaccgtggtgagcctggtccccctggtcctgct
ggcttcgctggcccccctggtgctgatggccaacctggtgcgaaaggtgaacctggtgat
actggtgtgaaaggtgacgctggtcctcctggccctgctggtcccgctggaccccctggc
cccattggtaacgttggtgctcctggacccaaaggttctcgtggtgctgctggtccccct
ggtgctactggtttccctggtgctgctggtcgtgttggtccccctggtccctctggaaat
gctggaccccctggccctcccggtcccgttggcaaagaagggggcaaaggtccccgtggt
gagactggtcccgctggacgtcctggtgaagttggtcccccaggtccccctggccctgct
ggtgagaaaggatctcctggtgctgatggacctgctggctctcctggtacccctggacct
cagggtattgctggacagcgtggtgtggtcggtcttcccggtcagagaggagaaagaggc
ttccctggtcttcctggaccctctggtgaacccggcaaacaaggtccttctggagcaagt
ggtgaacgtggtccccctggccctatgggcccccctggattggctggcccccctggtgaa
tctggtcgtgagggatcccctggtgctgaaggctcccctggaagagatggtgctcctggt
gccaagggtgaccgtggtgagactggccctgctggcccccctggtgctcctggtgctcct
ggtgctcccggccctgttggtcctgctggcaagaatggcgaccgtggtgagactggtcct
gctggtcctgctggtcccattggccctgctggtgcccgtggtcctgctggaccccaaggc
ccccgtggtgacaagggtgagacaggcgaacaaggtgacagaggcataaagggtcatcgt
ggcttctctggtctccagggtcctcctggctctcctggctctcctggtgaacaaggcccc
tctggagcttctggtcctgcaggtccccggggtccccctggctctgctggttctcctggc
aaagatggactcaacggtctccctggccccattggtccccctggtcctcgaggtcgcact
ggcgatagtggtcctgctggtccccccggacctcctggaccccctggccctcccggtcct
cccagcggtggttatgacttcagcttcctgcctcagccacctcaagagaagtctcaagat
ggtggccgttactaccgggccgatgatgccaacgtggtccgtgaccgtgaccttgaggtg
gacactaccctcaagagcctgagccagcagattgagaacatccgcagccctgagggcagc
cgcaagaaccccgcccgcacatgccgtgacctcaagatgtgccactctgactggaagagc
ggagagtactggatcgaccctaaccaaggctgcaacctggatgccatcaaggtctactgc
aacatggagacaggtcagacctgtgtgttccccactcagccctctgtgcctcagaagaac
tggtacatcagcccaaaccccaaggagaagaagcatgtctggtttggagagagcatgacc
gatggattccagttcgagtatggaagcgaaggttccgatcctgccgatgtcgctatccag
ctgaccttcctgcgcctgatgtccaccgaggcctcccagaacatcacctatcactgcaag
aacagcgtagcctacatggaccaacagactggcaacctcaagaagtccctgctcctccag
ggctccaacgagatcgagctcaggggcgaaggcaacagtcgattcacctacagcacgctt
gtggatggctgcacgagtcacaccggaacttggggcaagacagtcatcgaatacaaaacc
accaagacctcccgcctgcccatcatcgatgtggctcccttggacattggtgccccagac
caggaattcggaatggacattggccctgcctgcttcgtgtaa
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