Rattus norvegicus (rat): 294018
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Entry
294018 CDS
T01003
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
294018 (Taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
294018 (Taf5)
03036 Chromosome and associated proteins [BR:
rno03036
]
294018 (Taf5)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
294018 (Taf5)
Coactivators
SAGA/TFTC/STAGA complex
294018 (Taf5)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
294018 (Taf5)
STAGA complex
294018 (Taf5)
TFTC complex
294018 (Taf5)
SAGA complex
294018 (Taf5)
SLIK complex
294018 (Taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_Nup120_160
RAB3GAP2_N
CDK5RAP3
Beta-prop_RIG_1st
eIF2A
Cytochrom_D1
ABM-like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
294018
NCBI-ProteinID:
NP_001099835
RGD:
1311332
Ensembl:
ENSRNOG00000020274
UniProt:
A6JHP4
D3ZH66
LinkDB
All DBs
Position
1:255899774..255915259
Genome browser
AA seq
798 aa
AA seq
DB search
MAALAEEQTEVAVKLESEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGNVAAAAGGDGG
TPKPVVAVSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARL
LEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSAAPDTPGAGASVTSVFSGSASGPA
APGKVASVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYP
LFVHMYLELVYNQHESEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT
SKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGE
AKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAP
PQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDS
SLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGH
SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVS
GGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCV
RIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD
GEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVH
LHFTRRNLVLAAGAYSPQ
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctagagtctgagggaccg
ccaacgctgctacctccgcaggctggcgacggcgcaggcgagggtagcggtggcactcct
aacaacggccccaacggcggcggcgggaatgtggcggcggcggccggtggggacggcggg
acccccaaaccagtggtggctgtttctgccgctgccccggcgggggcggccccggtgccc
gccgctcccgcggaggccggcgctcctcacgaccgacagactcttctggctgtgctgcag
ttcctacggcagagcaacctccgcgaggccgaagaggcactgcgccgtgaggcccggctg
ctggaggaggcggtggcgggctccggagctccgggagagttggacggggctggcgcggag
gcggctagtgcgcttctcagccgggtcaccgcttcagttcccggctctgcggcccccgac
actccgggagccggcgcttcggtgacctcagtgttctcaggttcagcctcaggtcctgcg
gctccgggaaaggttgcaagtgtagctgtggaagaccagccagatgtcagtgctgtcttg
tcggcctacaaccaacaaggagaccctacaatgtatgaagaatactacagtggactgaaa
cacttcattgaatgttctctggactgccatcgagcagaattatcccaactcttttatcct
ctgtttgtacatatgtacttggagctagtttataatcaacatgaaagtgaagcaaaatca
ttctttgagaagttccacggagatcaggaatgttattaccaggatgacctacgagtatta
tctagtcttaccaaaaaggagcacatgaaagggaatgagaccatgctggactttcggaca
agtaaatttgttcttcgcatttcccgtgactcgtaccaactcttgaagcggcatcttcag
gagaaacagaacaatcagatatggaacatagttcaggagcacctctacatcgacatcttt
gacgggatgccccgcagtaagcagcagatagacgccatggtgggaagcctggcaggcgag
gctaagcgagaagcaaacaaatcaaaggtattttttggtttattaaaagaaccggaaatt
gaggtgcctttggatgatgaggatgaagaaggagaaaacgaagaggggaaacctaaaaag
aagaagcctaaaaaggatagtattggctctaaaagcaagaaacaagatcccaatgctcca
ccccaaaacagaatcccccttcccgagttgaaagattcagacaaactggacaaaataatg
aatatgaaggaaactaccaaacgagtgcgccttgggcctgactgtttaccctccatttgt
ttctatacattccttaatgcgtaccagggcctcactgcagtggatgtcactgatgattct
agcctgattgctggaggttttgctgattcaaccgtcagagtgtggtctgtgacccctaaa
aagcttcgtagtgtcaaacaagcatcagatcttagtcttatagacaaagaatcagatgat
gtcttagagagaatcatggatgagaaaactgcaagtgagttgaagattttgtatggtcac
agtgggcctgtctatggagccagcttcagtccggataggaactacctactctcctcttca
gaggatggaaccgttagactctggagcctgcagactttcacttgcttagttggatataaa
gggcacaactacccagtgtgggacacacagttttctccatatggatattatttcgtgtca
ggaggccatgaccgcgtagctcggctttgggctacagatcactatcagcctttaaggata
ttcgctggccatcttgctgatgtgaattgcactagatttcatccaaattccaactatgtt
gctacgggctctgcagacagaaccgtgcggctctgggacgtcctcaatggtaactgtgta
aggatcttcactggacacaagggaccaattcattccttgacattttctcccaatgggaga
ttcctggctacaggagcaacagatggcagagtacttctttgggatatcggacatggcttg
atggttggagaattaaaaggccacactgatacagtgtgttcacttaggtttagtagagat
ggtgagattttggcatcaggttcgatggataacacagttcggttatgggatgccatcaaa
gcatttgaagatttagaaactgatgactttactacagccactgggcatataaatctacct
gagaattcccaggagttactgttgggtacatacatgaccaaatcaacaccagtcgtacac
ctacattttacaagaagaaacttggttctagctgcaggagcttacagtccgcaataa
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integrated database retrieval system
