Rattus norvegicus (rat): 294027
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Entry
294027 CDS
T01003
Symbol
Col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform 1
KO
K07603
collagen type XVII alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
294027 (Col17a1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
294027
NCBI-ProteinID:
NP_001402769
RGD:
1311130
Ensembl:
ENSRNOG00000012110
LinkDB
All DBs
Position
1:complement(256472648..256518857)
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AA seq
1465 aa
AA seq
DB search
MDVTKKSMRDGTEVTERIVTETVTTRLTSLPPKGSTSNGYTKTGSLGGGSRLEKQSLTHG
SSGYINSSGSLRGNASTSSYRRAHSPASTLPNSPGSTFERKTHMSRHGTYEGSSSGNSSP
EYPRKELASSSTRGRSQTRESEIRVRLQSASPSTRWTELDEVKRLLKGSRSASASPTRNT
SNTLPIPKKGTVETKTVTASSHSVSGTYDSTILDSNFPPHMWSSTLPAGSSMGTYHNNIA
TQSTSLVNTNAYSAGSVFGVPNNMASCSPTLHPGLSSCSSVFGMQNNLAPCSSVLSHGTT
TASTAYGVKKNVPQPPTVTSTGVSTSAACTTSVQSDDLLHKDCKFLILEKDNVPAKKEME
LLIMSKDSGKVFTASPASISSTSFSEDTLKKEKQAAYAADTCLKADVNGDLNTVSTKSKA
ISAENHSYDRGVGGGRGKSGVAGGGGGGGGGGSGGGTWGAAPAWCPCGSCCSWWKWLLGL
LLTWLLLLGLLFGLIALAEEVRKLKARVEELEKTKVLYHDIVKTDRSSRDRLQGEAPSLG
PGLSKAEMDDYGQEAIWLFVRNKLMTEQENGNLRGSPGPKGDTGSQGPKGDRGLPGIPGT
PGPLGHPGPEGPKGQKGSIGDPGMEGPIGQRGLAGPMGPPGEPGPPGSGEKGDRGIAGEQ
GPRGLPGVPGSPGLRGTSGSPGPQGPPGSVGPQGLRGEVGLPGVKGDKGLVGPPGPKGDQ
GEKGPRGLTGEPGIRGLPGAVGEPGAKGAMGPAGPDGQQGSRGEQGLTGMPGARGPPGPT
GDPGKPGLTGPQGPQGLPGTPGRPGTKGEPGAPGRVMTSEGSSAITVPGPPGPPGAMGPP
GPPGTPGPAGPAGLPGQQGPRGEPGLAGDSFLNSGSSISEVLSAQGVDFRGPPGPPGPRG
PPGPSIPGPPGPRGPPGEGVPGPPGPPGSFLTDSETFFSGPPGPPGPPGPKGDQGDPGVP
GTPGIPGGLSHGTSSGTMYAQGPPGPPGPPGPPGSLSSSGQELQRYIAEYMQSDNIRTYL
SGVQGPPGPPGPPGPVITITGETFDYSQLASQVVSYLRSSGYGVGLSSASSSEDILAMLR
RNDVWQYLRQHLVGPPGPPGPPGVSGDGSLLSLDYGELSRHILNYMSSSGISFGHPGPPG
PPGLPGTSYEELLTMLRGSDYRDIIGPPGPPGPPGIPGSAWSSISVEDLSSYLHTAGLSS
IAGPPGPPGPPGPRGPPGVSAALATYAAENSDNFRSELISYLTSPDVRSFIVGPPGPPGP
QGPPGDYNWGSGSSARRGTSYSSSMGTGRTNGGSLGEGGAFGAGDGGPYGTDVGPGGGYG
AAAGGGVYGTNGESFRGSFTGDLDYNTLALRVSESMQRQGLLQGMAYTVQGPPGPQGPPG
ISKVFSAYSNVTQDLMDFFRTYGAIPGPPGQKGDMGTPGPKGDRGPAGPRGPPGPPGPRG
NKGEKGDKGDQVYTGRRKRSIAIKP
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaccaagaaaagcatgcgagatggcactgaagtcactgagagaattgtcacg
gaaacagtaaccacaagactcacatccttaccaccaaaagggagcaccagcaatggatac
actaagacaggctctctgggtggaggaagccggctagagaaacaaagtttgacccatgga
agcagcggctacatcaactcaagcggaagcctccgaggcaacgcttccacctccagttac
aggagagctcactcacctgcctcgaccctgcccaactctcccggctccacctttgaaagg
aaaactcacatgagccgccatggaacttacgaagggagctccagtggcaactcctcacct
gagtatccacggaaggaactcgcctcttcttcaaccagaggacgaagccagacacgagag
agcgaaattcgagttcgactacagagtgcgtcgccatccaccagatggacagaactggat
gaagtgaagcgcttgctgaaggggagccgatctgccagtgccagccccaccaggaacacc
tccaacacactccctatccccaagaaaggcaccgtagaaaccaaaacggtgacagcgagc
tcccactcagtgtcaggaacctatgattcaacaatactggacagcaactttcccccccac
atgtggtcttccaccttgccggcagggtcctccatggggacctatcacaacaacatagcg
acccagagcacatccctcgtcaacaccaatgcctactcagcaggatcagtctttggagtg
ccaaataacatggcgtcctgctctcccaccctgcacccaggactcagcagctgctcctca
gtgtttggcatgcagaacaatctggccccctgctcttctgtcctctcccatggcacaacc
acggcttccacagcatatggtgtgaagaaaaacgtgccccagccacccactgtcaccagc
accggcgtgtccacctctgccgcctgcaccaccagtgtccagagcgacgacctcttgcat
aaagactgcaagttcctgattctggagaaagacaacgtgcccgccaagaaggagatggag
ctcttgatcatgtccaaggacagtgggaaggtcttcactgcctcccccgccagcatctct
tcaacttctttttcagaggacaccctgaaaaaggagaagcaggctgcgtatgccgctgac
acatgtctaaaggcagatgtgaacggagacctaaacactgtgtctacgaagagcaaagcc
atctcggcagaaaaccacagctacgaccgaggtgtcggtggtggcagaggcaaaagcgga
gtcgccggcggtggtggtggtggtggcggcggcggcagcggcggcggaacatggggggct
gcacctgcctggtgcccctgcggctcctgctgcagctggtggaagtggctgctgggcctg
ctgctcacttggctgctgctgctgggtctgctcttcggcctcattgccctggcggaggag
gtaaggaagctgaaggcccgcgtggaggagctggaaaagaccaaggtgctatatcatgac
atcgtcaagacggaccgaagcagcagggaccgcctccagggtgaggcacccagcctggga
cctggattaagcaaggctgaaatggacgactacggccaggaggccatctggctgtttgta
aggaacaagctgatgacagagcaggagaacggaaatctcagaggaagtcctggtccaaaa
ggtgacacggggagtcaaggacctaaaggagaccgtggccttcctgggatcccaggtacc
cctgggcccctgggccaccccggcccggaaggaccaaagggacaaaaaggcagcattgga
gatccaggcatggaaggacccataggccagagaggactagcaggccccatgggacctcct
ggtgaacctgggcctccggggtctggagagaaaggagacagagggattgctggagaacaa
ggtcctcggggtcttcccggtgtcccgggttctccgggtctcagaggtaccagtggctct
cctggtccccagggccccccaggctctgtgggtccccaagggctccgaggtgaagtggga
cttccgggtgtcaaaggtgacaaaggactcgtgggaccaccaggacccaaaggtgaccag
ggtgagaaaggacccagaggcctcacaggggagcctggcatccgaggtctgcctggagct
gtgggtgaacctggagccaaaggagcaatgggtcccgctggccccgatggacagcaaggt
tccagaggtgaacaaggcctgactgggatgcctggagcccggggcccaccaggacccacc
ggagacccagggaagccaggtctcacaggaccccaaggacctcagggacttcctggtacc
cctggccgaccagggactaaaggtgaacctggcgctccaggcagagtcatgacttcagag
ggatcctcagcaatcactgtgccgggacctcccggacctcccggtgccatgggaccccca
ggacctccagggactccaggtccggctggccctgctggtctcccaggacaacaaggccca
cgaggggagccgggacttgctggggactccttcctaaacagtggcagttccatctccgaa
gtcctctctgcccaaggtgttgactttcgaggtccccctggcccacctggcccacgaggg
ccaccagggccttccattccaggcccaccaggacccagaggcccaccaggggaaggcgta
ccaggcccacccggcccaccaggatccttcctgactgactcggaaaccttcttctctggc
cctccaggtccacctggccccccaggtcccaagggagaccaaggtgaccccggtgtccca
ggcactcctggcatccctggtggtctttctcatgggacgtcgtcaggcactatgtacgca
cagggcccacctggtcccccaggacctcctgggcctccaggatctctcagcagctccggc
caggaactccagcgctatattgcagagtacatgcaaagtgacaacatcaggacttatctc
tcaggagttcagggtccccccggcccaccaggtcccccagggcctgtcatcaccatcaca
ggggagactttcgactactcccagctggcaagccaggttgtgagttacttgcgatcatca
ggctatggtgttggcttgtcctctgcctcctcctcagaagatatcttggccatgctgaga
cgcaatgatgtgtggcagtacctacgtcagcacctggtgggccctccgggtcccccggga
ccaccaggagtcagtggagatgggtccctcctgtctttggactatggagagctaagcaga
cacattctcaactatatgtcaagttctgggatcagctttgggcatcctggaccaccgggc
ccccctggcctgccaggaacatcctatgaggagctactgaccatgctccgagggtctgac
tacagagacatcattggacctccagggcccccagggccacccgggataccaggcagtgca
tggtccagcatcagtgtggaggacctgtcgtcatacttgcacactgctggtctgtcctcc
atcgcaggccccccgggccccccaggtcccccaggtcctcgagggcccccgggtgtgtca
gcagctctggccacctacgcagctgagaacagtgacaacttccgcagtgagctgattagc
taccttacaagtcctgatgtccgcagcttcatcgttggccctccaggtcctccagggcca
cagggaccacctggagactacaactggggtagcggctcctcagccagaaggggcacttcc
tacagctcttccatgggcacagggagaaccaatggtggctccctgggcgaaggtggagcc
tttggtgcaggagatgggggcccctacggcactgacgtcggcccaggcggaggctacggg
gcagctgcaggtggtggtgtatatggcaccaatggcgaatcattccggggcagcttcact
ggagacctagattataacacgctggcattgcgggtgtcggagagcatgcagcgtcagggt
ctgctacaagggatggcctacactgtccagggcccaccagggccacaaggccctcctggc
atcagcaaggtcttctctgcctacagcaacgtgacacaagacctcatggacttcttccga
acatatggcgctatcccaggaccccctgggcagaaaggagacatgggaaccccaggtccc
aaaggtgacaggggccctgctggaccacgaggtcctccggggcccccgggcccccgaggg
aacaaaggagagaaaggggataaaggtgaccaagtctatactgggaggaggaagagaagt
attgccatcaagccataa
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