Rattus norvegicus (rat): 29424
Help
Entry
29424 CDS
T01003
Symbol
Htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
rno
Rattus norvegicus (rat)
Pathway
rno05016
Huntington disease
rno05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
29424 (Htt)
05022 Pathways of neurodegeneration - multiple diseases
29424 (Htt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
29424 (Htt)
04131 Membrane trafficking [BR:
rno04131
]
29424 (Htt)
03029 Mitochondrial biogenesis [BR:
rno03029
]
29424 (Htt)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
29424 (Htt)
Membrane trafficking [BR:
rno04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
29424 (Htt)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
29424 (Htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
Motif
Other DBs
NCBI-GeneID:
29424
NCBI-ProteinID:
NP_077333
RGD:
68337
Ensembl:
ENSRNOG00000011073
UniProt:
A6IK16
G3V9P7
LinkDB
All DBs
Position
14:complement(80070456..80219668)
Genome browser
AA seq
3120 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQPPPQAPPPPPPPPPQPPQPPPQGQPPPPPPLPGPA
EEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDAES
DVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQK
CRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIANLKS
SSPTVRRTAAGSAVSICQHSRRTQYFYNWLLNVLLGLLVPMEEDHPTLLILGVLLTLRCL
VPLLQQQVKDTSLKGSFGVTRKEMEVSPSAEQLVQVYELTLHHTQHQDHNVVTGALELLQ
QLFRTPPPELLQALTTPGGLGQLTLVREEAGGRGRSGSIVELLAGGGSSCSPVLSRKQKG
KVLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELAASSSGVSTPGSVGHDIITEQPR
SQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQFSAVPSDPAMDLNDGTQASSPISD
SSQTTTEGPDSAVTPSDSSEIVLDGADSQYLGVQIGQPQEEDEEEAAGVLSGEVSDVFRN
SSLALQQAHLLERMGHSRQPSDSSVDKFVSKDEVAEAGDPESKPCRIKGDIGQPNDDDSA
PLVHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALHPESFFSKLYKVPL
STMESTEEQYVSDILNYIDHGDPQVRGATAILCGTLVYSILSRSRLRVGDWLGTIRALTG
NTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVLSLCSSSYSDLGLQLLIDMLPLKNS
SYWLVRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGFLKLQERVLNNVVIYLLGDE
DPRVRHVAATTLTRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVST
ITRIYRGYSLLPSVTDVTMENNLSRVVAAVSHELITSTTRALTFGCCEALCVLSAAFPVC
TWSLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAHQDALILAGNLLAA
SAPKSLRSSWASEEEGSSAATRQEEIWPALGDRTLVPMVEQLFSHLLKVINICAHVLDDV
TPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQTSTPMSPKKGGEASTASRQSDTSGPV
TASKSSSLGSFYHLPSYLRLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQILE
LATLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQ
CRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQADQEHDASGWFDVLQKVSA
QLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQLR
VNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPK
IIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLI
QYHQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNTLFE
ILAPSSLRPVDMLLRSMFITPSTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQEL
SFSPYLISCPVINRLRDGDSNPTLGERSEGKQVKNLPEDTFSRFLLQLVGILLEDIVTKQ
LKVDMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSDGCEGSFYTLDSLN
ARVRAMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCTKSLNPQISAEEDS
GSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQDFI
SAIHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYVDRLLGTP
FRALARMVDTLACRRVEMLLAANLQSSMAQLPEEELNRIQEHLQNTGLAQRHQRLYSLLD
RFRLSTVQDSLSPLPPVTSHPLDGDGHTSLETVNPDKDWYLQLVRSQCWTRSDSALLEGA
ELVNRIPAEDMSDFMMSSEFNLSLLAPCLSLGMSEIANGQKSPLFEAARRVTLDRVTNVV
QQLPAVHQVFQPFLPTEPTAYWSKLNDLFGDTTSYQSLTTLARALAQYLVVLSKVPAPLH
LPPEKEGHTVKFVVMTLEALSWHLIHEQIPLSLDLQAGLDCCCLALQVPGLWGVLSSPEY
VTHTCSLIHCVRFILEAIAVQPGDQLLGPESRSHTPRAVRKEEVDSDIQNLSHITSACEM
VADMVESLQSVLALGHKRNSTLPSFLTAVLKNIVVSLARLPLVNSYTRVPPLVWKLGWSP
KPGGDFGTVFPEIPVEFLQEKEVLKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPLVM
EQEESPPEEDTERTQIHVLAVQAITSLVLSAMAVPVAGNPAVSCLEQQPRNKPLKALDTR
FGRKLSMIRGIVEQEIQEMVSQRENTATHHSHQAWDPVPSLLPATTGALISHDKLLLQIN
SEREPGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEEADAPAPTSPPVSPVNSRKH
RAGVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRSLLVVSDLFTERTQFEMMYL
TLTELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLLESTLRSTHLPSQIGA
LHGILYVLECDLLDDTVKQLIPVVSDYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLMEN
YPLDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDTESLVKL
SVDRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPATPDSESVIVAMERVSVLF
DRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQT
LHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSPWVSAILPHVISRMGK
LEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVAAPGSPYHRLLACLQNVHKVTAC
NT seq
9363 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctggaaaaactgatgaaggctttcgagtcgctcaagtcgttccagcagcaa
cagcagcagcagcagccgccgccgcaggcgccgccaccaccgccgccgccgccgcctcaa
ccccctcagccgccgcctcaggggcagccgccgccaccaccgccgctgccaggtccggcc
gaggagccgctgcaccgaccaaagaaggaactctcagccaccaagaaggaccgtgtgaat
cactgtctaacaatatgtgaaaacattgtggcacagtctctcagaaattctccagaattt
cagaaactcttgggcattgctatggaactgtttctgctgtgcagcgacgatgcggagtca
gacgtcagaatggtggctgatgagtgcctcaacaaagtcatcaaagctttgatggactct
aatcttccaaggctacagttagaactctataaggaaattaaaaagaatggtgctcctcga
agtttgcgtgcagctctgtggaggtttgctgagctggctcacctggttcgacctcagaag
tgcaggccttatctggtgaatcttcttccatgtttgacccgaacaagcaaacgaccggag
gagtcagttcaggagactttggctgcagctgttcctaaaattatggcctcttttggcaat
ttcgcgaatgacaatgaaattaaggttctattgaaagctttcatagcaaatctgaagtca
agctctcccactgtgcggcggacagcagctgggtcagcagtgagtatctgccagcactct
aggaggacacagtacttctacaactggctcctgaatgtgctcctaggtttgctggttccc
atggaggaagaccaccccactctcctgatccttggtgtgttgctcacactgaggtgtcta
gtgcccttgctccagcagcaggtcaaggacacaagtctaaagggcagctttggggtaaca
cggaaagaaatggaagtctctccttctgcagagcagcttgtccaggtttatgaactgact
ttgcatcacacacagcaccaagaccataatgtggtgacaggggcattggagctcctgcag
cagctcttccgtacccctccacctgagctgctgcaagcactgaccacaccaggagggctc
gggcagctcactctggttcgagaggaagccgggggccgaggccgcagcgggagtatcgtg
gagcttttagctggagggggttcctcatgcagccctgttctctcaagaaagcaaaaaggc
aaagtgctcttaggagaggaagaagccttggaggatgactcggagtccaggtcagatgtc
agcagctcagcctttgcagcctctgtgaagagtgagattggtggagagctcgctgcttct
tcttcgggtgtctccactcccggttctgtaggtcacgacatcatcactgagcagcctcga
tcccagcacacacttcaagcagactctgtggatttgtcaggctgtgacttgaccagtgct
gctactgatggagatgaggaagacatcttgagccacagctccagccagttcagtgctgtt
ccatccgaccctgccatggacctgaatgatgggacccaggcctcctcacccatcagtgac
agttctcagaccaccactgaaggacctgattcagctgtgactccttctgacagttctgaa
attgtcttagatggtgctgacagccagtatttaggcgtgcagataggacagccacaggag
gaagacgaggaggaagctgcaggtgttctttctggtgaagtctcagacgttttcagaaac
tcttctctggcccttcagcaggcacacttgttggaaagaatgggtcatagccggcagcct
tctgacagcagtgttgataagtttgtttcaaaagatgaggttgctgaagctggggaccca
gaaagcaagccttgccgaatcaaaggtgacataggacagcctaatgatgatgattctgct
cctctggtacattgtgtccgtcttttatccgcttcctttttgttaactggcgaaaagaaa
gcactggttccagacagagatgtgagagtcagtgtgaaggccctggccctcagctgtatt
ggtgcagctgtggcccttcatccagagtcgttcttcagcaaactctacaaagtacctctc
agtaccatggaaagtactgaggaacagtatgtctctgacatcctgaactacatcgatcat
ggagaccctcaggtgcgaggagctactgccattctctgtgggacccttgtctactccatc
ctcagcaggtcccgtctccgtgttggtgactggctgggcaccatcagggccctgacagga
aatacattttctctggtggactgcattcctttactgcagaaaactttgaaggatgaatct
tctgttacttgcaagttggcttgtacagctgtgaggcactgtgtcctgagtctttgcagc
agcagctacagtgacttgggattacaactgcttattgacatgctgcctctgaagaacagc
tcctactggctggtgaggactgaactgctggaaactcttgcagagattgatttcaggctg
gtgagttttttggaggcaaaagcagaaagtttacaccgaggggctcatcattatacaggg
tttctaaaactacaagaacgagtactcaataatgtggtcatttatttgcttggagatgaa
gaccccagggttcgacatgttgctgcgacgacattgacaagacttgtcccaaagctgttt
tataagtgtgaccaaggacaggctgacccagtcgtggctgtagcaagagatcaaagtagt
gtttacctgaagctcctcatgcatgagacccagccaccatcccacttctccgtcagcacc
ataaccagaatctatagaggctacagcttactaccaagtgtaacagatgtcaccatggaa
aacaacctctcaagagtcgttgccgcagtttctcatgaactcattacgtcaactacacgg
gcactcacatttgggtgctgtgaagccttgtgtgttctttcagccgcctttccagtttgc
acttggagtctaggatggcactgtggagtgcccccactgagtgcctctgatgagtccagg
aagagctgcactgttgggatggcctccatgattctcaccttgctttcatcagcttggttc
ccactggatctctcagcccatcaggatgccttgattttggctggaaacttgctagcagcg
agtgcccccaagtctctgagaagctcatgggcctcggaagaagaaggcagctcagcagcc
accagacaggaggagatctggcctgccctgggggatcggactctggtgcccatggtggag
cagcttttctcccacctgctgaaggtgatcaatatctgtgctcatgtcttggatgacgtg
actcctggaccagcaatcaaggcagctttgccttctctcacaaaccccccttctctaagt
cctattcgacggaaagggaaggagaaagagcccggagaacaaacatccactccgatgagt
cccaagaaaggtggagaggccagtacagcctctcgacagtcagacacctcaggacctgtc
acagcgagtaaatcatcttcacttgggagtttctaccatctcccttcctacctcagactg
catgatgtcctgaaagccactcacgccaactataaggtcaccttagatcttcagaacagc
actgaaaagtttggggggttcctgcgctctgccttggacgtcctttctcagattctagag
ctggcgacactgcaggacattggaaagtgtgttgaagaggtccttggatacttgaaatcc
tgctttagtcgagaaccaatgatggcgactgtctgtgttcagcagctattgaagactctc
tttgggacaaacttagcctcacagtttgatggcttatcttccaaccccagcaagtctcag
tgccgagcacagcgccttggctcttccagtgtgaggcccggcttatatcactactgcttc
atggcaccatacacgcacttcacgcaggctttggctgatgccagcctgaggaacatggta
caggcggaccaggagcacgatgcctcagggtggtttgatgtactccagaaagtgtctgct
cagttgaagacgaaccttacaagtgtcacaaagaaccgtgcagataagaacgctattcat
aaccacattaggttatttgagcctcttgttataaaagcattgaagcagtacaccacgaca
acatcagtacaactgcagaagcaggttttggatttgctggcacagctggttcagctacgg
gtcaattactgtctactggattcagatcaggtgttcatcgggtttgtgctgaagcagttt
gagtacattgaagtgggccagttcagggaatcagaggcaattattccaaatatatttttc
ttcctggtactattatcttatgagcgctaccattcaaaacagatcattggaattcctaaa
atcatccagctgtgtgatggcatcatggccagtggaaggaaggctgtcacacatgctatt
cctgcgctgcagcccattgtccatgacctctttgtgttaagaggaacaaataaagctgat
gcagggaaagagcttgaaacccagaaggaggtggtggtctcaatgctgttacgactcatc
cagtaccatcaggtgctagagatgttcatcctcgtcctgcagcagtgccacaaagagaat
gaggacaagtggaaacggctctctcggcaggtcgcagacatcatcctgcccatgttagcc
aagcagcagatgcatattgactctcatgaagcccttggagtattaaataccttgtttgag
attttggctccttcctccctacgtcctgtggacatgcttttgcggagtatgttcatcact
ccaagcacaatggcatctgtaagcactgtgcagctgtggatatctggaatcctagccatt
ctgagggttctcatttcccagtcaaccgaagacattgttctttctcgtattcaggagctc
tccttctctccatatttaatttcctgtccagtaattaacaggttaagggatggagacagt
aatccaacactaggagaacgcagtgaagggaaacaagtaaagaatttgccagaagataca
ttctcaaggtttctcttacagctggttggtattcttctggaagacattgttacaaaacag
ctcaaagtggacatgagtgaacagcagcatacattctattgccaagagctcggcacactg
ctcatgtgtctgatccacatattcaaatctggaatgttccggagaatcacagccgctgcc
actagactcttcaccagtgatggctgtgaaggcagcttctatactctagatagcctgaat
gcacgggtgcgagccatggtgcccacacacccagctctggtactgctctggtgtcagatc
ctactgctcatcaaccacactgaccaccgatggtgggccgaggtgcagcagacgcccaag
agacacagtctgtcctgcacgaagtcactaaacccccagatatctgctgaagaggattct
ggctcagcagctcagcttggaatgtgcaatagagaaatagtacgaagaggggcccttatt
ctcttctgtgattatgtctgtcagaatctccatgactcagaacacttaacatggctcatt
gtgaatcacattcaagatctgatcagcttgtcccacgagcctccagttcaagactttatt
agtgccattcatcgtaattctgcagctagtggtctttttatccaggcaattcagtctcgc
tgtgaaaatctttcaactccaaccactctgaagaaaacacttcagtgcttggaaggcatc
catctcagccagtctggtgctgtgctcacactgtatgtggacaggctactgggcacccct
ttccgtgcgctggctcgcatggtcgacaccctggcctgtcgccgagtagaaatgcttttg
gctgcaaatttacagagcagcatggcccagttgccagaggaggaactgaacagaatccag
gaacacctccagaacactgggcttgcacaaagacaccaaaggctctattcactgctggac
agattccgactctctactgtgcaggactcacttagccccttgcccccagtcacttcccac
cctctggatggggatgggcacacatccctggaaacagtgaatccggacaaagactggtac
ctccagcttgtcagatcccagtgttggaccaggtcagattctgcactgctggaaggtgca
gagctggtgaaccgtatccctgctgaagatatgagtgacttcatgatgagctcggagttc
aacctaagccttttggctccctgcttaagccttggcatgagcgagattgctaatggccaa
aagagtcccctttttgaagcggctcgtagggtgactctggaccgggtgaccaatgtggtt
cagcagctgcctgcagtccatcaagtcttccagcctttcctgcctacagaacccacagcc
tactggagcaagctgaatgatctctttggtgataccacatcataccagtctctgaccaca
cttgcccgtgccctggcacagtacctggtggtgctctccaaagtgcctgctcctttgcac
cttcctcctgagaaggaggggcacacggtgaagtttgtggtaatgacacttgaggccctg
tcatggcatttgatccatgagcagatcccactgagtctggacctccaagccggcctagac
tgctgctgcctggcactgcaggtgcctggcctctggggggtgctgtcctccccagagtac
gtgactcatacttgctcccttatccactgtgtgcgattcatcctggaagccattgcagta
caacctggagaccaacttcttggtccggaaagcaggtcacatactccaagggctgtcaga
aaggaggaagtagactcagatatacaaaacctcagtcacatcacttcggcctgcgagatg
gtggcagacatggtggaatccctgcagtcggtgctggccctgggccacaagaggaacagc
accctaccttcatttctcacagctgtgctgaagaacattgttgtcagtctggcccgcctc
cccctcgttaacagctatactcgtgtgcctcctctggtatggaaactcgggtggtcaccc
aagcctggaggggatttcggcacagtgtttcctgagatccctgtagagttcctccaggag
aaggaggtcctcaaggagttcatctaccgcatcaacaccctagggtggaccagtcgtact
caattcgaagaaacttgggccaccctccttggtgtcctggtgactcagcccttggtgatg
gaacaggaagagagcccaccagaggaagacaccgaaaggacccagatccacgtcctggct
gtacaggccatcacctctctagtgctcagcgcaatggctgtgcctgtggctggcaatcca
gctgtaagctgcttggagcaacagccccggaacaagccactgaaggctctcgataccaga
tttggaagaaagttgagcatgatcagagggattgtagaacaagaaatccaagagatggtt
tcccaaagagagaatactgccactcatcattctcaccaggcatgggatcctgtcccttct
ctgttaccagctactacaggtgctcttatcagccatgacaagctgctgctgcagatcaac
tcagagcgggagccaggcaacatgagctacaagctgggccaggtgtccatacactccgtg
tggctggggaacaacatcacacccctgagagaggaggaatgggatgaggaggaggaggaa
gaagcggatgcccctgcgccaacatcaccacctgtgtctccagtcaattccagaaaacac
cgtgctggggttgatattcactcctgttcgcagtttctgcttgaattatacagccgttgg
atcctgccatccagtgcagccagaaggacccctgtcatcctgatcagtgaagtggttcga
tctcttcttgtggtgtcagacttattcactgaacgtacccagtttgaaatgatgtatctg
acgctgacagaactacggagagtgcacccttcagaagatgagatcctcattcaatacctg
gtgcctgccacctgtaaggcagctgctgttcttggaatggacaaaactgtggcagagccg
gtcagccgcctactggagagcacactcaggagcacccacctgcccagccagatcggagcc
ctgcatggcatcctctatgtgttggagtgtgacctcttggatgacactgtaaagcagctc
attccagttgttagtgactatctgctgtccaacctcaaaggaatagcccactgcgtgaac
attcacagccagcagcatgtgctggtgatgtgtgccactgcattctacctgatggaaaac
taccctctggatgtggggccagaattctcagcatctgtgatacagatgtgtggagtaatg
ctgtctggaagtgaggagtccaccccctccatcatttaccactgtgccctccggggtctg
gaacggctcctgctgtctgagcagctctctcggctagacacggagtccttggtcaagcta
agtgtggacagagtgaatgtacaaagcccacacagggccatggcagccctaggcctgatg
cttacctgcatgtacacaggaaaggaaaaagccagtccaggcagagcttctgaccccagc
cctgctacccctgacagcgagtctgtgattgtagctatggagcgagtgtctgtgctcttt
gacaggatccgcaagggatttccctgtgaagccagggtcgtggcaaggatcctgcctcag
tttctagatgacttctttccacctcaagatgtcatgaacaaagtcattggagagttcctg
tccaaccagcagccatacccacagttcatggccactgtagtatacaaggtttttcagact
ctgcacagtgctgggcagtcatccatggtccgggactgggttatgctgtctctgtccaac
ttcacacaaagaactccagttgccatggccatgtggagcctctcctgcttccttgtcagt
gcatctaccagcccatgggtttctgcaatccttccacacgtcatcagcaggatgggcaaa
ctggagcaggtggatgtgaaccttttctgcctggttgccacagacttctacagacaccag
atagaggaggaattcgaccgcagggctttccagtctgtgtttgaggtggtggcagcacca
ggaagtccataccacaggctgcttgcttgtttgcaaaatgttcacaaggtcaccgcctgc
tga
DBGET
integrated database retrieval system