Rattus norvegicus (rat): 294260
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Entry
294260 CDS
T01003
Symbol
Skic2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
294260 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
294260 (Skic2)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
294260 (Skic2)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
294260 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
294260 (Skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
294260
NCBI-ProteinID:
NP_998724
RGD:
1303059
Ensembl:
ENSRNOG00000000421
Vega:
OTTRNOG00000001713
LinkDB
All DBs
Position
20:3987130..3997887
Genome browser
AA seq
1241 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAALGTPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKAPVPGLLSLSRLLEPLDLSGGDEGEGEAAGGPRGDAASASP
SSTPLIRASSLEDLVLKEASTVVSTLEPLKPPPQEQWAVPVDVTSPVGDFYRLIPQPAFQ
WAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS
NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH
YINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP
LEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQGG
PAQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR
CLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFA
MGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEM
ADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQAL
ADLTKRLGALEEPDVTGQLADLPEYYSWAEELTETRNMIQRRIMESVNGLKSLSVGRVVV
VKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPAVSENPRDKGPATPDVPHPDDLVGFK
LFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVTTAV
QELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELIRGAQCVHSPRFPAQYV
KLQERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMS
SHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVAKRI
GEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAE
MCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctgcctcccccagaccccctgaacctgccccttcga
gctctggaagtggggtgcactggccgttgggagctgctaaacgtgccagggcctccagag
agtactcttccccatggcctccctccctgtgccccagatctgtgccaggaagcagagcag
ttgtttctgtcgtctccggcctggcttcctctacacggtgtggagcactcagctcgaaaa
tggcagaggaagacagatccctggtcgcttctggctgctctggggactccagtcccatcc
gaccttcaggcccagagacacccaaccacaggccatatactgggctataaggaggtcctg
ctggagaacacgaacctgtcggccaccacctccttgtcccttcgccggcctccagggcca
gcctcccagtcgctatggggcaatccgacacagtaccctttctggccgggtgggatggac
gagcccagcataactgatctgagtactcgggaggaagccgaggaggagatagactttgag
aaagatcttctcaccgttccacccggcttcaagaaaggggtggattttgcccccaaagct
cctgtgccaggtttgctcagcctcagccgtctgctggagcctctggatctgagtggaggt
gatgagggtgagggagaggcagcaggaggtcctagaggggatgcggcctcagcctctccc
tccagcactcccctgatccgggcaagcagcttggaggacctagtgttgaaggaagcttcc
acagtcgtatccaccctggagcccctcaaacctccacctcaggaacagtgggctgtgcct
gtggacgtcacctcccccgtgggtgatttttaccgtctcatccctcagccggccttccag
tgggcgttcgagccagatgtgtttcagaagcaggccatcctgcacttggagcagcacgac
tctgtctttgttgcagctcacacatccgctgggaagacggtggtggccgagtatgccatt
gccctggcccagaaacacatgacccgtaccatctacacttctcctatcaaagccctgagc
aaccagaagtttcgggacttccgaaacacattcggggatgtgggactgctcacgggggat
gtgcagctgcacccagaggcctcctgcctcatcatgaccacggagatccttcgctccatg
ctgtacagtggctcagacgtcatccgagacctggagtgggtcatttttgatgaagtccac
tatatcaatgatgctgagcgtggggtcgtgtgggaggaggtgctcattatgctccctgag
cacgtctccatcatcctgctgagtgccaccgtccccaacgccctggagtttgctgactgg
atcgggaggctgaagcggcggcagatctatgtgatcagcacggtggcccgtcccgtcccc
ttggagcactatctcttcacaggaaacagccccaagacacagggcgaactcttccttctg
ctggactcccgaggggccttccacaccaaggggtactacgctgccgtggaggccaagaaa
gagaggatgagcaaacacgcccagaccttcggggccaagcagcccacacaccagggtggg
cctgcgcaggaccgtggggtgtacctggccttgctggcttccctccggacccgggctcag
ttgcctgtggtagtgttcaccttctcccgaggccgctgtgatgaacaggcttcaggtctc
acctccctagacctcacaacaagctcagagaagagtgagatccacctcttcctgcagcgc
tgtcttgcccggctccgaggctctgaccgacagctcccccaggtcctgcacatgtcggag
ctcctccgccgaggcctgggtgtgcaccacagcggcatcctgcccatccttaaggagatt
gtggagatgcttttcagccggggcctagtcaaggtcctgtttgccaccgagacttttgcc
atgggggtaaacatgccagccaggacagtggtgtttgactccatgcgcaaacatgatggc
tccaccttccgggacctgctgcctggagagtacgtgcagatggcaggccgggcgggccgg
aggggcctggaccccacgggcaccgtcatccttctctgtaagggccgagtgcctgagatg
gcagatctacaccgcatgatgatggggaaaccatcacagcttcagtcccagttccgcctc
acatataccatgatcctcaacctgctgcgggtggacgccctcagagtggaagacatgatg
aagaggagcttctcagagttcccctcccgcaaggacagcaaggcccatgagcaggctctg
gctgacctcaccaagaggctgggggctttggaggagcctgatgtgactggtcagttggct
gacctgcctgagtattacagctgggcggaggagctgacagagacccggaacatgatccag
cgacgcatcatggagtctgtgaacgggctgaaatctctgtcagtgggaagggtggtggtt
gtgaagaatgaagagcatcacaatgcgctgggtgtgatcctgcaggtctcctcaaactcc
actagccgagtatttacaaccttggtcttgtgtgataaacctgctgtgtctgagaaccca
agggacaaggggccagccactccagatgtgccccacccagatgaccttgtaggcttcaag
ttgttcctgcctgaagggccctgcgagcacactgtggccaagctccagccaggggatgtg
gctgccatctctaccaaggtgctccgggtgaatggggagaagatttctgaggacttcagc
aagaggcagcaaccgaaattcaggaaggaccctcccctcgcggccgtgaccactgctgtt
caggagctgctgcgtctggcccaggcctatccagcaggacccccaaccctcgaccctatc
aacgacctgcaactgaaggatgtggcagtggtagaaggtgggctccgggcccggaagctg
gaggagctgatccgaggcgctcagtgtgtacacagcccccggtttcctgcccagtatgtg
aagctacaggagcgaatgcagattcagaaggaaatggagaggctgcgcttcctcctgtct
gaccagtcgctgttgctgctccccgagtaccaccagcgtgtagaggtgcttcggaccctg
ggctatgtggatgaggctggcacagtgaagctggcgggccgggtggcctgtgccatgagc
agccatgagctgctcctcactgaactcatgtttgacaatgcactgagtgctctgcgacca
gaggaaatagcagctctgctctctggtctggtgtgccagagccccggagaccctggggat
cagctgccaagcaccctcaaacagggggtagaacgcgtcaaagctgtggccaagcggatt
ggtgaggttcaggtggcctgcggcctgaaccagacggtggaggaatttgtgggggagctg
aattttgggctggtggaagttgtttatgagtgggctcggggtatgcccttctccgagttg
gcagggctctcggggacccccgaaggcttggttgtccgctgtatccagcgcctggctgag
atgtgccgctcacttcgaggggcggcccgtttggtaggagagcctgtgttaggggccaag
atggagacggcagccaccttgctccggagggacatcgtcttcgcagccagcctctatacc
cagtaa
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integrated database retrieval system
