Rattus norvegicus (rat): 295027
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Entry
295027 CDS
T01003
Symbol
Pcdh18
Name
(RefSeq) protocadherin-18 precursor
KO
K16499
protocadherin 12/17/18, delta 2
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
295027 (Pcdh18)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rno04515
]
295027 (Pcdh18)
Cell adhesion molecules [BR:
rno04515
]
Cadherins
Protocadherins
295027 (Pcdh18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Ig_CLSTN
Cadherin_FAT4_N
Cadherin_CELSR2_9th
TMEM154
Cadherin_C_2
Syndecan
Viral_Beta_CD
Motif
Other DBs
NCBI-GeneID:
295027
NCBI-ProteinID:
NP_001093994
RGD:
1305870
Ensembl:
ENSRNOG00000009949
UniProt:
B5DEL4
A0ACM8QGX9
LinkDB
All DBs
Position
2:complement(135982929..135996917)
Genome browser
AA seq
1135 aa
AA seq
DB search
MHQINTKMHFRFALSLLMAFFSHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPN
PSAIRFRAMPRGNSPLLVVNENTGEISIGAKIDREQLCQKNLNCSIEFDVLTLPTEHLQL
FHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSAND
YFNIEVRTRTDGAKYAELIVVKELDRELKASYELQLTASDMGVPQRSGSSILKISISDSN
DNSPAFEQPSYTIQLLENSPVGTLLLDLNATDPDEGVNGRIVYSFSSHVSPKIIETFRID
SERGHLTLFKPVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEISINLMS
PGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLNGEIICKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGTPNLSSVRHFTVQVNDINDNPPRFQRSQYEFVISENNSP
GAYITTVTATDPDLGENGHVTYTILESFVLGSSITTYVTIDPSNGAIYALRIFDHEEVSQ
ITFVVEARDGGSQKQLSSNTTVVLTIIDENDNVPVVVGPAMHNNTADISIPKGVESGFHV
TRLRVVDRDSGANAEFTCSIVAGNEENIFIIDPRSCDIHTNVSIDSISSTEWALSVIIQD
KGNPPLHTKVLLRCMVFDYTESVTSTAMTSVSHASLDVSMIIIISLGAICAVLLVIMVLF
ATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPS
SSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEG
FSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQ
QHSHPGLDDDSQPAESGEKKKSFSTFGKDSPSDEDSGDSSTSSLLSEMNSVFQRLLPASL
DTYSECSEVDRSNSLERRKGPAQGKTGGYPQGVAAWAASTHFQNPTSSSGTPLGTHSSVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaaataaatactaaaatgcactttagattcgcactttcacttctgatggcgttt
ttcagccacgatgtcctgggtaagaatctgaaatacaggatttatgaggagcagagggtc
ggatcggtaattgctagactatcagaagatgtggctgatgttttactgaagctaccaaat
ccttctgccattcgttttcgagccatgccacgggggaattctcctctcctggtcgtaaat
gagaataccggagaaatcagcataggggctaaaatcgaccgcgagcaactatgccaaaag
aacttgaactgttcgatagagtttgatgtgctcactctgccgaccgagcatctgcagctg
ttccatattgaagtggacgtgttggacattaatgacaattcccctcaattctcgagaccc
gtcattcccattgagatatcggagagcgcagcagttgggactcgcatccctctggacagt
gcgttcgaccccgatgttggggaaaattccctccacacctactcgctctctgctaatgat
tattttaatatcgaagtgcggaccaggacggacggggccaagtatgctgaactcatagtg
gtgaaagagttggatcgggagctgaaggctagctatgagctgcagctcacggcctctgac
atgggagtgcctcagaggtctgggtcctccatcctgaaaataagcatttcggattccaac
gacaacagcccggcctttgagcagccctcttacacaatacaactcttagaaaactcccca
gttggaaccttgctcctcgatctaaatgccactgatcctgatgagggcgttaatgggaga
attgtatattctttcagcagccatgtgtctcccaaaattatagagacttttaggatcgac
tcagaaagaggacacttgactcttttcaagccggtggattatgaaatcaccaagtcctat
gagatagatgttcaagcccaagatctgggtcccaattccattcctgctcattgcaaaatt
ataattaaggtcgtggatgtcaatgacaataagcctgaaattagcataaacctcatgtcc
cctggaaaagaagaagtgtcttatgtttttgaaggggatcccattgatacatttgttgct
atcgtcagggttcaagacaaggattctgggctgaatggggaaataatctgtaagcttcat
gggcatgggcactttaaacttcagaagacttatgaaaacaactacttaatcttgaccaat
gccactctggatagagaaaagagatctgagtacagtttgactgtgattgctgaggacaag
ggaacacccaacctctcttcagtgagacattttactgttcaagtcaatgacataaatgac
aatccacctcgcttccagaggagccaatatgaatttgtcatctcagagaataattcgcca
ggggcgtacatcaccacagttacagccaccgatccagacctgggtgaaaatgggcatgtg
acatacaccattttggagagttttgtcttgggaagttccattaccacgtatgtaaccatt
gatccatccaatggcgccatctatgccctcaggatctttgatcatgaggaagtgagtcag
atcacttttgtggtggaagcaagggatggagggagtcagaagcaactctcaagcaacacc
acagttgtgctgaccatcattgacgagaatgacaatgtccctgtggttgtagggcctgca
atgcacaacaacactgcagacatctccatccccaaaggagtcgaaagtggtttccatgtc
acaagactaagggtagtggacagagactctggtgcaaatgctgaattcacctgctccata
gtagctggtaatgaggaaaacatctttatcatagatccaaggtcatgtgacatccatacc
aacgtcagcatagactccatttcctccaccgaatgggcactttcagttatcatccaggac
aagggcaatcctcctctgcacaccaaagtcctcctgaggtgcatggtctttgactataca
gaatctgtgacaagcacagccatgacttctgtcagtcacgcatccttggatgtgtctatg
atcataattatttccttaggggcaatctgtgcagtgttgctggttattatggtactgttc
gccacgaggtgcaatagagaaaagaaagacaccaggtcctacaactgcagggtggcagaa
tccacttaccagcatcatcccaaaaggccgtccaggcagattcacaaaggagacattaca
ctggtgcccaccatcaatggtactctgcccatcagatctcaccacagatcctctccatct
tcatctccaaccttggaaagggggcagatgggcagccgccagagtcacaacagtcaccag
tcactcaacagtttggtgaccatctcctcaaaccacgtgccagagaatttttcattagaa
ctcacccatgccactcctgctgttgagcaggtctcacagcttctctccatgctccaccag
gggcaatatcagccacggccaagctttcgaggaaacaaatattccaggagctatagatat
gcccttcaagacatggataaatttagcttgaaagacagtggccgtggagatagtgaagca
ggagacagtgattatgatttggggcgagattctccaatagacaggctcctgggagaagga
ttcagtgacctctttctcactgatggaagaattccagcagccatgaggctatgtacggag
gaatgcagagtcctgggccactctgaccagtgctggatgcctccactgccctcgccatcc
tcagactacagaagcaacatgttcatccccggagaagagttcccggctcaacctcaacaa
cagcattctcatccgggccttgatgatgacagtcagcctgccgaatctggggagaaaaaa
aagagcttttccacctttgggaaggattcccctagcgacgaggactccggggactctagc
acatcatctctgctatcagaaatgaacagtgtgttccaacgcctcctccccgcatcccta
gatacctattctgaatgcagcgaagtggaccggtccaactccctggaacgtcgaaagggt
ccagcacagggcaaaactgggggttacccacaaggggttgcagcctgggcagccagcaca
cattttcagaaccccaccagcagctctgggacccctctggggactcactccagtgtgcag
ccttcttccaagtggttgccagctatggaggagatccctgaaaactacgaggaagatgat
tttgacaatgtgctgaaccatcttagtgatgggaaacacgaactcatggatgccagcgag
ctggtagctgagatcaacaaactgcttcaagatgtccgccagagctag
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integrated database retrieval system
