Rattus norvegicus (rat): 29560
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Entry
29560 CDS
T01003
Symbol
Hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04066
HIF-1 signaling pathway
rno04137
Mitophagy - animal
rno04140
Autophagy - animal
rno04148
Efferocytosis
rno04659
Th17 cell differentiation
rno04919
Thyroid hormone signaling pathway
rno05167
Kaposi sarcoma-associated herpesvirus infection
rno05200
Pathways in cancer
rno05205
Proteoglycans in cancer
rno05208
Chemical carcinogenesis - reactive oxygen species
rno05211
Renal cell carcinoma
rno05230
Central carbon metabolism in cancer
rno05231
Choline metabolism in cancer
rno05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
29560 (Hif1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
29560 (Hif1a)
04137 Mitophagy - animal
29560 (Hif1a)
04148 Efferocytosis
29560 (Hif1a)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
29560 (Hif1a)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
29560 (Hif1a)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
29560 (Hif1a)
05205 Proteoglycans in cancer
29560 (Hif1a)
05208 Chemical carcinogenesis - reactive oxygen species
29560 (Hif1a)
05230 Central carbon metabolism in cancer
29560 (Hif1a)
05231 Choline metabolism in cancer
29560 (Hif1a)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
29560 (Hif1a)
09162 Cancer: specific types
05211 Renal cell carcinoma
29560 (Hif1a)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
29560 (Hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
29560 (Hif1a)
Transcription factors [BR:
rno03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
29560 (Hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
DDRGK
HLH
Motif
Other DBs
NCBI-GeneID:
29560
NCBI-ProteinID:
NP_077335
RGD:
61928
Ensembl:
ENSRNOG00000008292
UniProt:
O35800
A6HC66
D4A8P8
LinkDB
All DBs
Position
6:98357788..98405068
Genome browser
AA seq
826 aa
AA seq
DB search
MEGAGGENEKKNRMSSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASV
MRLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY
MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTSRG
RTMNIKSATWKVLHCTGHIHVYDTSSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTES
VLKPVESSDMKMTQLFTKVESEDTSCLFDKLKKEPDALTLLAPAAGDTIISLDFGSDDTE
TEDQQLEDVPLYNDVMFPSSNEKLNINLAMSPLPASETPKPLRSSADPALNQEVALKLES
SPESLGLSFTMPQIQDQPASPSDGSTRQSSPEPNSPSEYCFDVDSDMVNVFKLELVEKLF
AEDTEAKNPFSAQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESNSPSPPSVSTVTGFQ
QTQLQKPTITVTAATATTATTTDESKAVTKDNIEDIKILIASPPSTQVPQEMTTAKASAY
SGTHSRTTSPDRAGKRVIEKTDKAHPRSLNLSVTLNQRNTVPEEELNPKTIALQNAQRKR
KMEHDGSLFQAAGIGTLLQQPGDRAPTMSLSWKRVKGYISSEQDGMEQKTIFLIPSDLAC
RLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggcggcgagaacgagaagaaaaataggatgagttccgaacgtcgaaaa
gaaaagtctagggatgcagcacgatctcggcgaagcaaagagtctgaagttttttatgag
cttgctcatcagttgccacttccccacaacgtgagctcccatcttgataaagcttctgtt
atgaggctcaccatcagttacttacgtgtgaggaaacttctagatgctggtgatcttgac
attgaagatgaaatgaaagcacagatgaactgcttttatctgaaagccctggatggcttt
gttatggtgctaacagatgatggtgacatgatttacatttctgataacgtgaacaaatac
atggggttgactcagtttgaactaactggacacagtgtgtttgattttacccatccatgt
gaccatgaggaaatgagagaaatgcttacacacagaaatggcccagtgagaaaggggaaa
gaacaaaacacgcagcgaagcttttttctcagaatgaaatgtaccctaacaagccggggg
aggacgatgaacatcaagtcagcaacgtggaaggtgctgcactgcacaggccacattcat
gtgtatgataccagcagtaaccagccgcagtgtggctacaagaaaccgcctatgacgtgc
ttggtgctgatttgtgaacccattcctcatccatcaaacattgaaattcctttagacagc
aagacatttctcagtcgacacagcctcgatatgaaattttcttactgtgatgaaaggatt
actgagttgatgggttatgagccagaagaacttttgggccgttcaatttatgaatattat
catgctttggactctgatcatctgaccaaaactcatcatgacatgtttactaaaggacaa
gtcaccacaggacagtacaggatgcttgcaaaaagaggtggatatgtctgggttgagact
caagcaactgttatatataatacgaagaactctcagccacagtgcattgtgtgtgtgaat
tatgttgtaagtggtattattcagcacgacttgattttctcccttcaacaaacagaatct
gtcctcaaaccagttgaatcttcagatatgaaaatgacccagctgttcactaaagtggaa
tctgaggacacgagctgcctcttcgacaagcttaagaaagagcccgatgccctgactctg
ctagctccagcggctggggacacgatcatatcactggacttcggcagcgatgacacggaa
actgaagaccaacaacttgaagatgtcccgttgtacaatgatgtaatgttcccctcttct
aatgagaaattaaatataaatctggcaatgtctccattacctgcctctgaaactccaaag
ccacttcgaagtagtgctgatcctgcactgaatcaagaggttgcattgaagttagagtca
agcccagagtcactgggactttcttttaccatgccccagattcaagatcagccagcaagt
ccttctgatggaagcactagacaaagctcacctgagcctaacagtcccagtgagtactgc
tttgatgtggacagcgatatggtcaatgtattcaagttggaactggtggaaaaactgttt
gctgaagacacagaagcgaagaatccattttcagctcaggacactgatttagacttggaa
atgctggctccctatatcccaatggatgatgatttccagttacgttcctttgatcagttg
tcaccattagagagcaattctccaagccctccgagtgtgagcacagttacaggattccag
cagacccagttacagaaacctaccatcactgtcactgccgcaactgccaccaccgccacc
accactgatgaatcaaaagcagtgacgaaggacaatatagaagacattaaaatactgatt
gcatctccaccttctacccaagtacctcaagaaatgaccactgctaaggcatcagcatac
agtggtactcacagtcggacaacctcaccagacagagcaggaaagagagtcatagaaaaa
acagacaaagctcatccaaggagccttaacctatctgtcactttgaatcaaagaaatact
gttcctgaagaagaattaaacccaaagacaatagctttgcagaatgctcagaggaagcga
aaaatggaacatgatggctccctttttcaagcagcaggaattggaacgttactgcagcaa
ccaggtgaccgtgcccctactatgtcgctttcttggaaacgagtgaaaggatacatatct
agtgaacaggatggaatggagcagaagacaatttttttaataccctctgatttagcatgt
agactgctggggcagtcaatggatgagagtggattaccacagctgaccagttacgattgt
gaagttaatgctcccatacaaggcagcagaaacctactgcagggtgaagaattactcaga
gctttggatcaagttaactga
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