Rattus norvegicus (rat): 295602
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Entry
295602 CDS
T01003
Symbol
Rif1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
KO
K11138
telomere-associated protein RIF1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
295602 (Rif1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rno03032
]
295602 (Rif1)
DNA replication proteins [BR:
rno03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
295602 (Rif1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rif1_N
Motif
Other DBs
NCBI-GeneID:
295602
NCBI-ProteinID:
XP_038962181
RGD:
1562474
Ensembl:
ENSRNOG00000054901
LinkDB
All DBs
Position
3:56963840..57017106
Genome browser
AA seq
2424 aa
AA seq
DB search
MTAPGRSPLEPLLETWEDPSVSPGEQTDAYLTLTSRMTGEEGKEVIAEIEKNLPRLYTVL
KAHICSQSSELSSAALQALGFCLYNPRITSGLSETNIQELLLTLNGIIKSSDKNVCTRAL
WVISKQTFPTELVSKMVSSIIDSLEVILSKGEIHSAVVDFEALNVIIRLIEQAPVQMGEE
SVRWAKLVIPLVVHSAQKVHLRGATALEMGMPLLLQKQQEIALITEHLMTTKLISELQKL
FMSKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGTPMIKKIAFIAWKSL
IDNFALNPDILCSAKRLKLLMQPLSSIHVRTETLALTKLEVWWYLLMRLGPQLPANFEQV
CVPLIQSTISVDSSASPQGSSSRGSTPGLSPLTPGNKGASYGTPRVNLGSNIGGMATIPS
IQLLGLEMMLHFLLGPEVLSFAKQHKIVLSLEPLEHPLISSPSFFSKYAHTLITAVHDSF
VAVGKDASDAVVSAIWKELISLVKSVTESGNRKERSGSEVLTLLLKSLENIVKSEVFPVS
KTLVLMEITVKGLPQKVLGSPAYQVANMDILNGTPALFLIQLILNNNLLECGVEDEKFFL
NLETLVGCVLSGPTSPLAFSDSVLTVINQNAKQLANKEHLWRMWSMIVSPLTDVIHQTNE
VNQGDALEHNFSAIYGALTLPINHIFSTPTFPTGTMKTLLKTWSELYRAFARCAAVVATA
EENLCCEELSSKIMCSLEDEALSDLLFLDRISHVVVVMVDCIDFSPYNIKYQPKIKSPQR
SSDWSRKKKEPLGKLASLFKLIVRIIDSFHTLSLKETYSDTLLAIGNSIISMLSNIFGHI
SLSSMIREIFTTFTRPLALLYENSKLDEVPKVYTSLNNKLEKLLGEIVACLQFNYLGAYD
SELLGQLSPLLCIIFLHKNKQIRKQSAVLWNATFAKATALIYPEELKPILRQAKQKILLL
LPGLENVEMMDESSGPYSDATENSQLNVKISGMERKSSGKRDSILAHTKEKKENVRLSAK
LKLDSSSPKLKNGKLLEEEKSTDFVFIPPEGKETKARILTEHQKEVLKTKRCDIPALYNN
LDASQDTLFSAQFSQEESMESLTLTEKPKEDAKIIKEEQMESAIFIPQDAPENCTIDQHP
EKASLPNYGGSVAETNPETLSTGFDARKEMLISSKMSAECSSSSETTVVSSSSVSNATFS
GTPQPTSRRQTFITLEKFDGSETRPFSPSPLSNLSSTVTVRNNQDNTTKTDMPQKARKRE
VTHSKSDSEKLANGGKKSSRRWSKAEQSVNKKFKPSPTSEQEEQSFENNPPDLLSSAECV
SENHDHPSEATLEHEDRDPRASVENASLEDLAEGKNVGINKDPKESASPVVAATEQTVNE
GSQAAAAAPNPKALRRSSRRRSEAVESSGDSQEKESGQQKRERRKEEERTISKSPCHIKD
DKLPKQKLTAEPPIQENLTEKENSLQERTLGEPSANAEIDQNRRKPDLETVSSEGGGGTL
DNVDKSSEKPLRGRTRYQTRRASQGLISGVENSESDSSEAKEEVSRKKRSGKWKNKSSDS
VDIEEQEEKMVEDEVMKTASQTHDGQAVPDDINAVAQICEKNINNRVILQDSSGSTDSLQ
VSLTGEDKSKTSKCLDSSLVSLPVPESNLRTRNASKRLYKRDTDSNVGASDMSMSPEKCT
QVVECQHKRSRRVRRSKSCDCCGEKSQSQEKSFTGLKNTESSAMKSLETKKTDLQMPETA
PETQEANEHVETKSVGKQPVVNFHLGLEEISATGDLIKSEPKLEEDSKNSPPSEPVNMKE
KTYGTDASEAVSEIQEPCGEEYNAPEDPCLSDCKDISQKYPLDNKAESPEAILQKELDIS
NVGKACKVMDGSSPEGVESIESSVRKDTFGAAVSEKSTQMDVSVDVATEEDNKKDECEAV
TTEVNAEGVATEDFNSSMGLSDTTTPVSKDVQAEHPASGELEAGSNESDSGSCEEMNKEM
ESYKAQMNTEIDNARVKDMDMIASTSKSEEALIGRLDVNTEGFVSDIEMSSGEGTGKCKT
ETNIELNKLDEIKLGGNQTTVGNETLQEVCFTSEKVEELPQPLIPEVTSELGAESNNVSP
VKLELDPSFGSASESPSGVQARCVWSPLASPSTSILKRALKRSQEDEISPINKVRRVSFA
DPIYQAGLADDIDRRCSVVRSHSSNSSPVIKSVKTSPTSHSKHNTTSAKGFLSPGSQSSK
FKSSKKCLITEMAQESMLSPTESVYPALVNCAASVDIILPQITSNMWARGLGQLIRAKNI
KTIGDLSTLTASEIKTLPIRSPKVFNVKKALRVYHEQQMKSRGLEEIPIFDISEKAVNGV
ESKTLSTDEERFASDLIDPVTLDTPLSKNLVAQISALALQLDSEDLYSYSGSQLFEMHEK
LGTMANSIIRNLQSRWRSTAHENS
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgacggccccaggtcgtagccccctggagccgcttctggagacatgggaggacccctcg
gtgtctcccggagagcagacggacgcctacctaactctgaccagtcgtatgacaggagaa
gaaggaaaagaagttattgcagaaatcgagaaaaaccttcctcggttgtacacggtttta
aaggctcacatttgcagtcagagctcagaactgagtagtgctgctctacaagccttggga
ttttgtttatataatcccagaattacctcaggattatcagagacaaatattcaagaactg
ctattaaccttgaatggtatcattaagagttcagacaaaaatgtgtgtaccagggcactg
tgggtaatatccaaacagacatttcctactgaacttgttagcaaaatggtatccagtatt
attgattcgttggaagtgatactaagtaaaggagagatacattctgctgttgttgatttt
gaagcattaaatgttattataaggctaattgaacaagcaccagttcaaatgggagaagag
tctgtgagatgggccaaattggtcataccattggttgttcactcagcacaaaaagtacac
ttgcggggagccactgcgctagaaatggggatgccactgctgcttcagaaacaacaagaa
atagccttgattacagagcaccttatgactacgaaattaatctcagaactccaaaagcta
tttatgagtaaaaatgagacttatgtgttaaaattatggcctttgtttgtcaaacttctt
ggaaagacattgcaccgaagtgggagtttcatcaattctttgttacagctggaagaacta
ggcttccgtagtgggacacccatgattaaaaaaatagctttcattgcttggaaaagctta
atagacaattttgctttaaacccagatatactttgtagtgcaaaaagactgaagttgtta
atgcagcctttgagttccatccatgtgagaacagaaactttagcactaacaaaactagaa
gtctggtggtatttactgatgagacttgggcctcagctccctgccaattttgaacaggtt
tgtgtgccactgattcagagtacaataagcgttgatagtagtgcttcacctcaaggcagt
tcatctcgaggatctactcctggcttgagtccactgactcctggaaataaaggtgcttct
tacggaacgcctcgtgtgaacctgggttcaaatataggtggaatggctacaatcccttct
attcagcttttgggactggaaatgatgcttcattttttgttgggtccagaagtcttgagt
tttgccaagcagcacaagattgtattgagtttagagcccctggagcatccactcatcagc
agcccttctttcttctccaagtatgcacatacgctcatcactgctgttcatgacagcttt
gtcgcagttggaaaggatgcttcagatgcagtagtcagtgctatctggaaggagctaatt
agtttggtgaagtcagttactgagtcaggaaacagaaaagaaagatcaggttctgaagtt
ttgaccctcctactaaaatctttggaaaacatagtgaagtcagaagtatttcctgtatca
aaaacactggttctcatggaaattacagttaaaggacttcctcagaaagtattaggttca
ccagcatatcaggttgctaatatggatattcttaatggaactccagcattgttcttaatc
cagttaattttaaacaacaatcttttagaatgtggtgtagaagatgaaaagttttttctc
aatctagaaacacttgtaggctgtgtgctttctggtccgacatcaccactggctttcagt
gattctgtattaactgtgattaatcagaatgcaaagcagttggcaaacaaggagcatctc
tggagaatgtggagtatgatagtcagtccactgacggatgtgattcatcagaccaatgaa
gtgaatcaaggtgatgccttagaacataattttagtgccatctatggtgcattgactttg
ccaataaaccatattttttcaactccaacatttcccacgggtaccatgaaaactttactt
aaaacttggtcagaattgtatagagcttttgctcgctgcgctgctgtggtggcaacagca
gaagagaatttgtgctgtgaagaactttcttctaaaataatgtgcagtttggaagatgaa
gccctttcagacttgctgttcttggacaggatttctcatgttgttgtagtaatggttgat
tgtattgacttttcaccatataatattaaataccagccgaaaatcaaatcaccacagaga
tcttcagattggtccaggaagaagaaggagcccctagggaaattggcttctttatttaag
ctaatcgtgagaatcatcgattctttccacactctaagcctcaaggaaacatactctgat
acactgcttgctattggtaactctatcattagcatgctttccaatatatttggacatatt
tctttgtcgtctatgatccgagaaatatttacaacttttacaagacccctggctttactc
tatgaaaattcaaagcttgatgaggttcctaaagtgtatactagtttgaacaacaagtta
gaaaagttattaggagaaattgttgcttgtctacagttcaactatcttggagcctatgac
agtgaacttcttggacaactttctccactcctgtgcataatttttcttcacaagaataaa
cagattcggaaacagagtgctgtgttgtggaatgctacatttgctaaagcaacagctctg
atctatcctgaggaattaaaaccaatattaagacaagccaaacaaaaaatcttgcttctt
ttgcctggtttggaaaatgttgagatgatggatgagtccagtggaccatattcagatgca
acagagaattcacaattaaatgtcaagataagtggcatggaaagaaaatcaagtggaaag
agagattccattttggcacatacaaaggagaaaaaagaaaatgtgagattatcagccaaa
ctgaaactagactcttcatctccaaaattaaagaatggtaagcttttggaagaggaaaag
tctacagactttgtcttcatacctccagaaggaaaagagacaaaggcaaggattctaact
gagcaccagaaagaagtactcaaaacaaaacggtgtgatattcctgctttgtataataat
ctggatgcgtcacaagacactttattttctgctcagtttagtcaagaagaatcaatggaa
agcctcactttaactgaaaaaccgaaagaagatgccaagataattaaggaagagcaaatg
gagagtgccattttcattcctcaagatgccccagaaaactgtacaatagatcaacatcct
gagaaagcttctttaccaaattacggtggctctgttgctgaaaccaatccagaaactctg
agcactggttttgatgctagaaaagaaatgttaatttcatcaaagatgtcagctgaatgt
tcatctagttcagaaactacagtggttagcagtagttcagtttctaatgccactttttct
ggaactccacagcctacaagtcggagacaaacctttattactttggagaaatttgatggt
tcagaaactagacctttcagtccatcccccttgagtaacttgtcttccactgttacagtg
agaaacaaccaagataacacaactaaaactgatatgccacaaaaagcaaggaaaagagaa
gtgactcactcaaaatctgattcagaaaaattagcgaatggaggtaagaagtcaagcagg
aggtggagtaaagctgagcagtcagttaataaaaagtttaagccttcaccgacatctgaa
caggaagaacagtcatttgaaaacaaccctcctgatttgctcagttcagcagaatgtgtg
tcagaaaatcatgatcatccttctgaagctactctagagcatgaagatcgagatcctaga
gcatcagtggaaaatgcttcattggaagacttagcagaaggaaaaaatgtaggcattaat
aaggaccctaaagaaagtgcatccccagttgtagcagcaacagaacaaacagtaaatgaa
gggagtcaagctgccgcagcagctcccaatccaaaagcactcagacggtcctcaaggcgg
cgttcagaagcagtagagtcttctggtgacagccaggagaaggaaagtggtcaacaaaaa
agggaaagacgaaaagaagaagaaaggacaatttcaaagagtccatgtcatatcaaagat
gataagttgcccaagcaaaaactaacggctgagccacctatacaggaaaatttaactgaa
aaagaaaatagtttacaggagagaactttaggggaacccagcgctaatgctgaaattgac
caaaatagaagaaaacctgaccttgagaccgttagctctgagggaggtggtggcactttg
gacaatgtagataagtcatctgagaagcctttaagaggtcggacacgttatcaaacaaga
agagcttctcagggtttgatttccggtgttgaaaactcagaatctgatagttctgaggca
aaggaagaagtttctagaaagaaacgatcaggaaaatggaaaaataaaagtagtgacagt
gttgatattgaagaacaagaagaaaaaatggttgaagatgaagttatgaaaactgcaagt
cagacacatgatggtcaggcagttcctgatgatataaatgcagtagctcagatttgtgaa
aaaaatataaataatagggtaatccttcaggattcttctgggtctacagattcactgcaa
gtttcactaacaggcgaggacaaaagtaagactagcaaatgtttagacagttcacttgta
agtctacctgtgccagaatcaaacctcaggactagaaatgccagtaaaagattatataaa
cgagatactgatagtaatgtgggggcatcagacatgtctatgtctcctgaaaaatgcacc
caagtagttgaatgccagcacaagagaagtaggagagtcaggaggtctaaaagttgtgac
tgctgtggagaaaaatcacagtcccaggaaaagtcatttactgggttaaagaacacagaa
agttctgccatgaagagcttggagacaaaaaagacagatctacaaatgcctgagactgca
cctgaaactcaggaagccaatgagcatgttgaaacaaagtcagtaggcaaacagcctgtt
gtgaattttcatttgggtcttgaagagatttcagctactggtgatctaattaaatctgaa
cctaaattggaagaagatagtaaaaattcccctccttctgaaccagtaaatatgaaagag
aaaacttatggtacagatgctagtgaagcagtatctgaaatccaagagccatgtggtgag
gaatacaatgctcctgaggacccatgcttaagtgactgcaaggacatttcacagaagtac
cctttagataacaaagcagaaagtccagaagctattctgcaaaaagagttggacatcagc
aatgtaggaaaggcatgcaaagtaatggatgggtccagtccagagggagttgaaagtata
gaatccagtgtgagaaaggacacatttggagctgctgtctctgaaaagagtacccaaatg
gatgtttctgtagatgtggcaacagaggaagataataaaaaggatgagtgtgaagcagtc
acaactgaagtgaatgctgaaggagtagccactgaggactttaattcaagtatgggtctt
tctgatactaccacacctgtaagtaaggatgttcaggctgagcatccagcaagtggggaa
ctagaggcgggtagcaatgaatctgattcaggctcatgtgaggaaatgaacaaagaaatg
gaaagttacaaagcacaaatgaacactgaaattgacaatgccagggtaaaggatatggac
atgattgccagcacctctaaatctgaagaagcactgattgggagacttgatgtcaacact
gagggctttgttagcgacattgaaatgagttctggagaaggaactggtaaatgcaaaact
gaaacaaacattgaacttaataaattagatgaaataaaattaggtggtaatcaaactaca
gtgggaaatgaaactctgcaggaagtttgctttacttcagagaaagtggaggaattacca
cagcctctgatacccgaagtgacttctgaacttggagcagaaagcaataatgtatcccct
gtcaagttagagctggatccttcctttggatcagcaagtgaaagtcctagtggtgtgcag
gcacgctgtgtctggtcgcctttggcttctccatccacaagcattttaaagagagcacta
aaaagatcccaagaagatgagatctcaccaattaacaaggttagacgtgtctcatttgca
gatccaatataccaagcaggattggcagatgacattgataggcgctgctctgttgttagg
tctcattcttcaaatagctctcctgtaataaaaagtgttaaaacttcacctacttcacac
tctaagcataataccacttcagccaaaggatttctgtccccaggatcacagagctctaaa
tttaagagctcaaagaagtgtttaattacagaaatggcccaagaatccatgctatcccca
acagaaagtgtttacccagctttggtgaactgtgcagcatcagttgacatcattttacct
cagattacatcaaacatgtgggcaagaggtcttggacaacttatcagagccaagaatata
aaaacgattggtgatttgagtacacttacagcatctgaaataaaaactcttcctattcgc
tctccaaaggtgtttaatgtaaaaaaggccctcagagtataccatgaacaacagatgaaa
tctcgtggacttgaagaaattccaatttttgatatttctgaaaaggcagtaaatggggta
gagagcaagaccctgtccacggatgaagaaaggtttgcctcagatttgattgatcctgtg
accttagataccccactgtctaaaaatcttgtggcacagattagtgctcttgctcttcag
ctggactcagaagacctctacagctactctggaagccagctgtttgaaatgcatgaaaaa
cttggtaccatggcaaactctataataagaaatctacagtcacgttggagatcgacagcc
catgaaaattcttag
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integrated database retrieval system
