Rattus norvegicus (rat): 295607
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Entry
295607 CDS
T01003
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
295607 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
295607 (Prpf40a)
Spliceosome [BR:
rno03041
]
Complex A
U1 snRNP components
U1 related factors
295607 (Prpf40a)
Complex B
295607 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
295607
NCBI-ProteinID:
NP_001099950
RGD:
1311401
Ensembl:
ENSRNOG00000004864
UniProt:
A6JF33
LinkDB
All DBs
Position
3:complement(58036779..58098996)
Genome browser
AA seq
953 aa
AA seq
DB search
MRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSSSWVSADGFLRRRPSMGHPG
MHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMSGMMMSHMSQAS
MQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ
LLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGGLITKSNLHAMI
KAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPT
NTVGSVPVAPEPEVTSIVATAVDNENTVTASAEEQAQLANTTALQDLSGDISSNTGEEPP
KQETVTDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN
DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYK
KAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANV
TYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRER
RRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFY
VEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSL
LEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDIT
LESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKK
RQRSESHSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRESE
KDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgaggccggggactggagccgagcgtggaggcctcatggtgagtgaaatggagagccaa
cctccctcgcggggtcccggggacggggagcggagattgtccggctcaaacctgtgctcc
agttcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcatcctggc
atgcattatgcaccaatgggcatgcaccctatgggtcagcgagcaaacatgcctcctgta
cctcacggaatgatgccacagatgatgcctcctatgggagggcctccaatgggacaaatg
cctggaatgatgtcttcagtaatgtcaggaatgatgatgtctcatatgtctcaggcttcc
atgcaacctgctttaccgcctggagtgaacagtatggatgtagcagcaggtgcagcatct
ggtgcgaaatcaatgtggacagaacataaatcacctgatggaaggacttattactataat
actgaaacaaaacagtctacctgggaaaagccagatgatcttaaaacacctgctgagcaa
ctattgtctaaatgcccatggaaagagtacaaatctgattctgggaagccttattactat
aattctcaaacaaaagagtcccgctgggccaaacctaaggaacttgaagatcttgaagga
taccagaataccattgttgctggaggtcttattacaaaatcaaacctgcatgccatgatc
aaagcagaagaaagcagcaagcaagaagaatgtactacaacatcaacagccccagttcct
acgacagaaattcctaccactatgagcaccatggctgctgcagaagcagcagctgctgtt
gtcgcagctgctgcagccgctgcagcagcagctaatgccaatacttccaccacacctact
aatactgtgggaagtgttccagttgctcctgaacctgaagttacttccattgttgctact
gctgttgataatgagaatacagtgactgcatcagctgaggagcaagcacagcttgctaat
actacagctcttcaagacctaagtggcgatatatccagtaacactggagaggaaccacct
aaacaagaaactgtaaccgattttactcctaaaaaagaagaggaagagagccaaccagca
aaaaaaacatatacttggaatacaaaggaggaggcaaagcaagcatttaaagaattattg
aaagaaaagcgggtaccctccaatgcttcatgggagcaagctatgaaaatgatcataaat
gatcctcggtacagtgctttagcaaagctgagtgagaagaagcaggcatttaatgcctat
aaagtccagacagagaaggaggaaaaagaagaagcaagatcaaaatacaaagaagctaag
gaatcctttcagcgttttcttgaaaatcatgaaaaaatgacttccacaaccagatacaaa
aaagctgagcaaatgtttggggagatggaagtttggaatgcaatatcagagcgtgatcgt
cttgaaatctatgaagacgttttgttcttcctttcaaagaaagaaaaggaacaagcaaag
cagttacgaaagagaaattgggaagccttaaaaaacatacttgacaatatggctaatgtt
acatactctaccacttggtctgaagcccagcagtatctgatggataatccaacgttcgca
gaggatgaagagttacagaacatggataaagaagatgcattaatatgctttgaggaacac
atccgagctttagaaaaggaagaagaagaagaaaaacagaagactttgttgagagaaagg
aggaggcagcgtaaaaatagggaatcttttcagatctttctagacgagttgcatgagcac
gggcagctgcactctatgtcctcttggatggagctgtatccgaccattagctctgacatt
cgattcactaatatgctgggtcagcctggatcaactgcacttgatcttttcaagttttat
gttgaagatcttaaagcacgatatcatgatgaaaaaaagataataaaagacattctgaag
gataaaggatttgtagttgaagtaaacactacttttgaagattttgtggcaataatcagt
tcaaccaaaagatcaaccactttggatgctggaaatatcaagttggctttcaatagttta
ctagaaaaggcagaagcccgtgaacgtgagagagaaaaggaagaagctcggaaaatgaaa
cgaaaagagtctgcctttaagagtatgttgaaacaggccactcctccaatagaactggat
gctgtctgggaagatatccgggaaagatttgtgaaggaaccagcatttgaggatataact
ctagaatctgaaagaaaaagaatatttaaagatttcatgcatgtgcttgagcatgaatgt
cagcatcatcattcaaagaacaagaaacattctaagaaatctaaaaaacaccataggaaa
cgctcccgctctcgatcgggatcagactcagatgatgatgacagccattcaaagaaaaaa
agacagcgatcagaatcccattctgcttcagaacattcttctagtgctgagtctgagaga
agttacaagaaatcaaaaaagcataagaagaaaagcaaaaagaggagacataaatctgac
tctccagaatcagatactgaacgagagaaggataaaaaagaaaaagatcgggaaagtgaa
aaagacagaagtaggcagagatcagaatcaaaacacaaatcacctaagaaaaagactgga
aaggattctggtaactgggatacttctggcagtgaactgagtgaaggggaattagaaaag
cgcagaagaacccttttggagcaactggacgatgatcaataa
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