Rattus norvegicus (rat): 296083
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Entry
296083 CDS
T01003
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04140
Autophagy - animal
rno04148
Efferocytosis
rno05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
296083 (Vps18)
04148 Efferocytosis
296083 (Vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
296083 (Vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
296083 (Vps18)
Membrane trafficking [BR:
rno04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
296083 (Vps18)
Hops complex
296083 (Vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_5
zf-RING_Vps41
zf-RING_16
zf-C3HC4_2
KNOX2
zf-ANAPC11
zf-RING_2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
296083
NCBI-ProteinID:
NP_001099969
RGD:
1311556
Ensembl:
ENSRNOG00000013689
UniProt:
F7F0E9
B5DFJ4
LinkDB
All DBs
Position
3:126733276..126744130
Genome browser
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQTGCPSVGIPHSGYVNAHLEKEVPIFTKQRIDFTPSERITSL
VVSCSQLCMSLGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLVALSSTE
VLYMNRNGQKARPLARWKGQLVESVGWNKALGSESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRAVEDAE
AQGFSGLFAAYTDHPPPFREFPGNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEEKVWEYPAGIGPGANPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPDALNLYRDTRECFRTFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVTYHCQHEAYEEALAVLARHRDPQLFYKFSP
VLIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGDAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPTYKQARLEELQR
KLGTAPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQHYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatactggatgagtatgaggactcattgtcccgctcggccgtcttgcagact
ggttgccccagcgtgggcatcccccattctgggtatgtaaatgcccatctggagaaggag
gtgcctatcttcacaaagcagcggattgacttcaccccctccgagcgaatcaccagcctt
gttgtttcctgcagtcagctctgtatgagcctgggcaaggatacgctgctccgcattgac
ttgggcaaggcaagcgaacccaaccgtgtggagctgggccgcaaggatgatgccaaagtc
cacaagatgttcctggaccacactggctctcatctgctggttgctctgagtagcaccgag
gtcctgtacatgaaccgcaatggacagaaggcccggccgctggctcgctggaaggggcag
ctggtggagagtgtgggttggaacaaagcgctgggcagtgagagcagcaccggccccatc
ctggttggcacagctcaaggacagatctttgaagcagagctctcagctagcgaaggcggc
ctctttggccctgcccctgatctctacttccgtccactgtatgtcttaaatgaagaaggg
ggtccagcacctgtgtgctcccttgaggcggagcgtggccctgacggacggggctttgtc
attgctaccactcggcagcgcctcttccagttcataggccgagcagtagaagatgctgaa
gcccaaggcttctcgggcctctttgcagcctatacagaccacccaccgccattccgtgag
tttcctggcaacttggggtatagtgagttggctttctatacccctaagttacgctctgca
ccccgtgcctttgcctggatgatgggagatggtgtgctgtatggctcactggactgcggg
cgccctgactccctgctgagcgaggagaaagtgtgggaatacccagcagggattggtcct
ggggccaatccacccttagccatcgtcttgacccagttccatttcctactgctgctggcg
gaccgggtggaggctgtgtgtactctaacagggcaggtggtgctacgggatcacttcctg
gagaagtttggaccactgaggcacatggtgaaggactcgtccacgggtcacctctgggcc
tacactgagcgagcagtcttccgataccacgtgcaacgtgaggctcgggatgtctggcgc
acctacctggacatgaaccgctttgacctggccaaagagtattgtcgcgagcggccagat
tgcctagacacagtcctggcccgagaggctgatttctgctttcgtcagcatcgctacctg
gagagcgcccgctgctatgctctgacccagagctattttgaggagattgccctcaagttt
ttggaggcccggcaagaagaggcactggctgagtttctgcagcggaaactggccggcttg
aagccaactgagcgtactcaggccacactactgaccacttggctgacagagctctacctg
agccggcttggtgctctgcagggtgacccagacgccctgaatctctaccgggatacacgg
gagtgcttccgtacttttctcagtagccctcggcacaaagagtggctctttgccagccgg
gcctctatccatgagctgcttgccagtcacggggacacagagcatatggtgtattttgca
gtgatcatgcaggactatgaacgggtggtcacataccactgccagcatgaggcctatgag
gaggccctggctgtgctagcccgccaccgagacccccagctcttctacaaattctcgcct
gtcctcatccgacatatcccccgccagctggtggacgcctggattgagatgggcagccgg
ctggatgcccggcagctcattcctgccctggtgaactatagccaggggggcgacgctcag
caggtgagccaagccatccgctatatggaattctgtgtgaatgtgcttggcgagactgag
caggccattcacaactacctgctgtcactgtatgcccgtggccagccagcctcacttctg
gcctacctggaacaagctggggccagcccgcaccgtgtacactatgatctcaaatatgca
cttcgactttgtgctgagcacggccaccaccgcgcctgcgtccatgtctacaaggtgttg
gagctgtatgaagaggctgtggacctggccctgcaggtggatgtggacctggccaagcag
tgtgcagacctgccagaggaggatgaggaacttcggaagaaactatggctcaagatcgct
cggcatgtggtacaggaggaggaggacgtacagacagccatggcctgcttggccagctgc
cccttgctcaagattgaggatgtgttgcccttctttcctgactttgtcacaatcgaccac
tttaaggaggcaatctgtagttcacttaaggcctacaaccaccatatccaggagctacag
cgcgagatggaggaagccacagccagcgcccagcgtatccgacgagacttgcaggagctt
cgagggcgctatggcaccgtggagccccaggacaaatgctccacctgtgacttccctttg
ctcaaccgccccttttacctttttctctgtggccacatgttccacgctgactgtctgctg
caggccgtgaggcctggccttcctacctacaaacaggccaggcttgaggagttgcagcgc
aagctcgggactgcgcctcctccaaccaaaggctctgtgaaggccaaggaggcggaagct
ggggctgcagctgtggggcccagccgggaacagctcaaggctgacctcgatgagctggtg
gctgctgagtgtgtgtactgtggggagctgatgattcgctccattgaccggcccttcatc
gacccccagcactatgaggaggaacacctcagctggctgtag
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