Rattus norvegicus (rat): 296159
Help
Entry
296159 CDS
T01003
Symbol
Vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04140
Autophagy - animal
rno04148
Efferocytosis
rno05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
296159 (Vps16)
04148 Efferocytosis
296159 (Vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
296159 (Vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
296159 (Vps16)
Membrane trafficking [BR:
rno04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
296159 (Vps16)
Hops complex
296159 (Vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
296159
NCBI-ProteinID:
NP_001005541
RGD:
1359414
Ensembl:
ENSRNOG00000021222
UniProt:
A6HQ90
F7FA01
LinkDB
All DBs
Position
3:138075649..138097154
Genome browser
AA seq
839 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCWRKEKAA
SVRPVLEMYSASGMPLASLLWKSGPVVALGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAYRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTLCHERVAHILLAVGPDLYLLDHATCSAVTPAGLAPGVSSFLQMAVSFTYRYLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKEKAVVVAWERRLMVVGNAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKRLLRAASFGKCFLDRFPPDSFVH
MCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQG
VSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRAELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMA
LSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYK
AKNEFAAKATEDQMRLLRLQRRLEDELGGRFLDLSLHDTVTTLILGGHNKRAEQLARDFR
IPDKRLWWLKLSALADLEEWEELEKFSKSKKSPIGYLPFVEICMKQHNKHEAKKYASRVG
PEQKVKALLLVGDVAQAADVAIEHRNETELSLVLSHCTGTTDGAIADKIQRARAQAQKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggactgttacactgcgaactggaatccactcggggactctgccttttaccggaagtat
gaactgtacagcatggactgggacctgaaggaggagctcaaggattgtctggtggctgct
gcaccctatgggggccccattgctctactgaggaactgctggagaaaagagaaagctgcc
agtgtgcggccagtactggagatgtactctgcttctggcatgcccctggctagcctgctg
tggaagagtgggcctgtggtggccctcggctggtcagccgaggaggagctgctctgtgtg
caggaagatggtgcagtgctagtttatgggcttcatggagacttccggaggcacttcagc
atgggcaatgaagtgcttcagaaccgtgtcttggatgctcggatttttcacactgagttt
ggttctggggtggccatccttaccggagcctatcgatttactctgagtgctaatgtgggt
gacctcaaactccgtcggatgccagaggtgccaggtctgcagagtgcaccctcctgctgg
accacactgtgccacgagcgagtagcacacattcttctggctgtaggacctgatctttac
cttctggatcatgctacctgctctgcagtgacacctgctggtctagctccaggagtgagc
agcttcctacagatggctgtatccttcacgtaccgttacctggcactcttcacagacaca
ggctacatctggatggggacagcatcactcaaggagaagctgtgtgagttcaactgcaac
atccgggcacccccgaagcagatggtctggtgtagccgtcctcgaagcaaggaaaaggct
gttgttgtagcctgggaaaggcggctgatggtggtgggcaatgcgcctgaaagcattcag
tttgtgcttgatgaggactcctacttagtgcctgagcttgatggggtccgcatcttctct
cgaagtacccatgaattcctgcatgaagtcccagtggccagtgaagagatcttcaaaatt
gcctcaatggcccctggagcactgctgttggaggcacagaaggagtatgagaaagagagc
caaaaagcagatgaatatctgcgggagatccaggaactggggcagctgatccaggctgtg
cagcagtgcattgaggctgcaggacatgagcaccaaccagacatgcaaaagcgtctgctc
agggcggcttcgtttggaaagtgtttccttgacagatttccgcctgacagcttcgtgcac
atgtgtcaggaccttcgagtgctcaatgctattagggactaccacattgggatccctctg
acctatacccaatacaagcagcttaccatccaggtgctgctcgacaggctcgtgttgcgg
aggctttatcccctggctatccagatatgcgagtacctgcgccttcctgaagtacagggc
gtcagcaggatcctagcccactgggcctgctacaaggtgcagcagaaagatgtctcagat
gaggacgtagcacgggctattaatcagaagctgggtgacacgcctggtgtttcatactct
gacattgctgcaagggcctatggctgtggccgcgctgaactggccattaagctgctggag
tatgagccacggtcaggggaacaggtacctcttctcctgaagatgaagaggagcaaacta
gctctgagcaaggccattgagagtggagacactgacctggtgtttacagtgctgctgcac
ctgaagaatgaactcaaccgaggagactttttcatgactctgcggaaccaacccatggcc
ctgagtttgtatcgacagttctgtaagcatcaggaactagacactctgaaggacctttac
aatcaggacgacaatcaccaggaattgggcagcttccacatcagagccagctatgctgcg
gaagagcgtattgaagggcgagtggcagctctgcaaacggcagctgacgccttctacaaa
gccaagaatgaatttgcagccaaggctacagaggatcaaatgaggctcctgcggctacag
cgacgcctggaggatgagctagggggcaggttcctagacctatctctacatgacacagtc
accacgcttatcctcggaggacacaacaagcgggcagagcagctggcacgtgactttcgc
atccctgacaagaggctctggtggttaaagctgtctgccctggcagatctggaagagtgg
gaggagctggagaagttttctaagagcaagaaatcaccaattggctacctgccctttgta
gagatctgcatgaagcaacataacaaacatgaggccaagaagtatgcttccagagtgggc
cctgagcaaaaggtcaaggctttgcttcttgtcggggatgtggctcaggctgcagatgtg
gctattgagcaccggaatgaaactgagctgagcctcgttttgtcccactgcactggaact
acagatggggccatagctgacaagattcagcgggccagagcacaagcccagaagaaatga
DBGET
integrated database retrieval system