Rattus norvegicus (rat): 296351
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Entry
296351 CDS
T01003
Symbol
Pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
296351 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
296351 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
296351 (Pabpc1l)
03041 Spliceosome [BR:
rno03041
]
296351 (Pabpc1l)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
296351 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
296351 (Pabpc1l)
Spliceosome [BR:
rno03041
]
Complex C
Other components
Complex C specific factors
296351 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_Nup35
SET_assoc
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
296351
NCBI-ProteinID:
XP_063141283
RGD:
1563142
Ensembl:
ENSRNOG00000012750
LinkDB
All DBs
Position
3:173111856..173145389
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AA seq
655 aa
AA seq
DB search
MDTRGHGCSLSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFS
TFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKRE
AELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEK
HEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKN
LDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQVTGCLQLRLREQN
VTDRGSVEMTLDKLLQSLKASFDLSLEGPTCFLSTTQTMYYSSASIAPMQPDPRWTAQPH
GPSSTCPPAASVVQPLSTAPHPCIHLSSASQASSQVPHTQRVVNIGTQTTGPGGEGSCIP
GQPLLAHRGSSAVHSAHGVQESTVYVPGHQPLTVSMLDAAPLHEQKQMIGERLYSLIHDA
CAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLKAHRAMESADSYRN
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaggggccacggctgctcactctcctcgctctatgtgggcgatctgcacccc
gacgtgaccgaagctatgctctatgagatgttctcccccatcggcactattctttccatc
cgtgtgtgtcgggacgtggccacccggcgctctctgggctatgcctatatcaacttccag
cagcctgctgacgcggagcgggcactggacacgatgaactttgagatgatcaaaggccag
cccatccgaatcatgtggtcccacagagacccaggccttcgaaggtccggtatgggcaac
atctttatcaaaaacttggagaattccattgacaacaaggctctgtatgacaccttctcc
acctttgggagcatcctgtcttctaaggtggtatacaatgagcatggatcacggggtttc
ggctttgtgcattttgagacccacgaggctgcccagaaggccatcaacaccatgaatggg
atgttgctgaatgaccggaaagttttcgtaggtcacttcaagtctcgccagaagcgggag
gcagagctgggggctcgggccctaggattcaccaacatctatgtgaagaacctgcgcgtg
gacatggatgagcagggcctccaggacctcttctcccagtttggaaagacgcagagtgtg
aaggtgatgagagacagcaatgggcagtcccggggcttcggcttcatcaactttgagaag
catgaggaagcccagaaggctgtggaccacatgaatgggaaggaggtgagcgggcagctg
ctctatgtgggccgggcccagaagcgggcagagcggcagaacgagctgaagcgcagattt
gaacaaatgaagcaggagaggcagaaccgctaccagggtgtgaacctttatgtgaagaac
ctggatgactccattaatgatgataggctgaaggaagttttttctacctatggagtgatc
accagcgctaaggtgatgacagaaagtagccacagcaagggctttggctttgtgtgcttt
tcctctccagaagaggcaacgaaggctgtgacagagatgaacgggcgcatcgtgggtacg
aaaccactgtatgtggccctggcacagcgcaaggaggagcggaaggccatcttgaccaac
cagtataggagacgcctctctcgctctgtcttgagctccttccagcagcctaccagctac
ctgctccctgctgtacaccaggtgacaggatgtctccagctccggctgagggaacagaac
gtcacagacagaggttctgttgaaatgaccttggacaagctgctccaatcccttaaagcc
tcatttgatctgtctttagaggggcctacatgctttctttctacaacccagactatgtac
tatagttctgcctccatagccccaatgcaacctgaccccaggtggacagcccagcctcat
ggaccttcatctacctgccctccagctgcctcggtggtccagcctctaagcacggcaccg
cacccctgtatccacctcagcagtgccagccaggcctccagccaggtgcctcacacgcag
agagtagttaacattggtacccagactacaggaccaggtggggagggatcctgtattcca
ggccagcctcttttggcacatagaggatcctccgctgtacacagtgcccatggggtccag
gagtcgaccgtgtatgtccctggccatcagcctctgactgtgtccatgctggatgctgca
cccctgcatgagcaaaagcagatgatcggggagcgtctctactcccttatccacgatgcc
tgcgccccactgactggcaagatcacgggcatgctgctggagatggacaacctggagctt
ctgttattgttggagtccccagagtccctccacgccaagatagaagaggccgtggcagta
ctgaaggcacatcgggcaatggagtcagcagacagttacaggaactga
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