Rattus norvegicus (rat): 297336
Help
Entry
297336 CDS
T01003
Symbol
Usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform 1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
297336 (Usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
297336 (Usp39)
Spliceosome [BR:
rno03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
297336 (Usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
297336
NCBI-ProteinID:
NP_001100067
RGD:
1308103
Ensembl:
ENSRNOG00000010930
UniProt:
A6IAA2
LinkDB
All DBs
Position
4:complement(105932140..105964551)
Genome browser
AA seq
568 aa
AA seq
DB search
MSSRSKRQSHGSTRGKRESESRGSSGRIKKERDREKEPEAASSRGSPVRVKREAEPTPRE
VPAPVLPVVRVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFE
KLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEI
IDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQ
ALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ
AVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLP
HPDLPAEEKEQLLHNEEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAK
FNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLR
EYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQM
ITLSEAYIQHMPSLSASAGRTLTDGCLI
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccggtccaagcggcagtctcatggttctacccgtgggaagcgcgagtccgag
tctcgaggtagctcgggtcgcatcaagaaggagcgagaccgcgagaaggagcccgaggcg
gcgagctcccggggtagtccggtccgcgtgaagcgggaggccgagccgactccgcgagag
gtcccggcgcccgtgctcccggttgtgcgggtgaagcgtgagcgtgaggccgacgaggac
tcggagcccgagcgggaggtgcgagcaaagaatggccgagtggattctgaagaccggagg
agtcgtcactgtccatacttggatactattaataggagtgtgctggacttcgactttgag
aaactctgttccatttctctctcgcacatcaatgcatatgcctgcctggtgtgtggcaag
tactttcaaggccggggtttaaagtctcatgcctacatccacagtgtccagttcagccac
catgtcttcctcaacctccacactctcaagttttactgccttcctgacaactatgagatc
atcgattcctcgctggaggatattacatatgtgttgaagcctactttcacaaagcagcaa
attgcaaacttggacaagcaagccaaattgtcccgggcatatgatggtaccacttacctg
ccagggattgtgggactgaacaacataaaagccaacgactatgcaaatgctgtgctgcag
gcactatctaacgttcctcctcttcggaactacttcctggaggaggacaattataagaac
atcaagcgtcctccgggggatatcatgttcttgttggtccagcgttttggagagctgatg
agaaagctctggaacccccgaaacttcaaggcacatgtttctcctcatgagatgcttcag
gccgtcgtactttgcagcaagaagactttccaaattaccaaacaaggggatggagttgac
ttcctgtcttggtttctgaatgctctgcactcagctctgggaggcaccaagaagaagaaa
aagactattgtgaatgatgttttccagggatcaatgagaattttcaccaaaaagcttcct
catcctgatctgccagcggaagagaaagagcagctgctccataatgaggagtaccaagag
acaatggtggagtccacgttcatgtacctgacgctcgaccttcccactgctccactctat
aaggacgagaaggagcagctcattatcccgcaagtgccactcttcaacatcctggccaag
ttcaacggcatcacggagaaggaatacaagacttataaggagaacttcctgaagcgcttc
cagctcaccaagctgcctccatatctaatcttttgcatcaagagatttacaaagaacaac
ttcttcgtggagaagaatccaacaattgtcaatttccctatcacaaatgtggatctgaga
gaatacttatctgaagaagtccaagcagtccacaagaacaccacctatgacctcatcgcc
aacattgtgcatgatggcaagccttctgagggctcctacaggatccatgtgcttcatcat
gggacaggcaagtggtatgaactacaagacctccaggtgacggacattctgccccagatg
atcaccctgtctgaggcgtacattcagcacatgccttccctttcagcatcagcaggcaga
actcttacagatggatgccttatttga
DBGET
integrated database retrieval system
