Rattus norvegicus (rat): 297408
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Entry
297408 CDS
T01003
Symbol
Alms1
Name
(RefSeq) centrosome-associated protein ALMS1
KO
K16741
alstrom syndrome protein 1
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
297408 (Alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
rno03037
]
297408 (Alms1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
297408 (Alms1)
Cilium and associated proteins [BR:
rno03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
297408 (Alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_repeat
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
297408
NCBI-ProteinID:
NP_001100074
RGD:
1311590
Ensembl:
ENSRNOG00000022343
LinkDB
All DBs
Position
4:119683085..119783471
Genome browser
AA seq
3245 aa
AA seq
DB search
MEPEDLPWPDELEEEEEEEEEEGKEEAENASAAATEEARTSEETGRLEEEELEGAGPEVD
LDFNSESQLQESTDEEEDELAKAWLQAHPDRPGQGFSLTPPPTPPPSSRHQYRPVEHWGK
REVIPLTYRAWQQTSYQDNARAQFSNSSTLLLEPEFQWDPEEVQRTESWHHLPQERDSFQ
TLNISQTGIDRVEGAEVKDLPSQEGGESVQAQCPVKEPKLDLLCSPLLVIQDDFAAPDLP
LLTCMTQDQEFEPDSLFQQSELEFAPLRGIPDKSEDIEWLARPSEVSEALIQATSESSSD
LVNSCFSISQHPLTEGLQGKAKSDVLILFGDAKYASIYENAGAHSERITELQREVDCSNL
SITQAFPSSLPSFVPQEPTIESEYHSSNLRMLRVSPDTLLTTLTQTTGSVDQKIGAAAIS
SPYSHGVQPGSFPQEELPDRHLTEEIRKVSPAPRPAGQKPEMPTVPSSSYSKGIKSVFYR
YPMSYSPQGKEPPNVSSVSGSAENALPLTVTSVSQPQRETAKAFYQQTLSDSLLTAETLP
VSVIPESGDQKTHLLSGFSLSYSHRGEDLPEDVVKVSTDSGSVDKKADIPTVSSSTYQHK
TKPGIIYYQEFPDSHVPIGTRKVVSQSGAAGQKTDLSAVPSTSSSQAEKPVPPSLLTLLG
SHLPEDVFKASYVCKSSEEPSGITALTSVSYSYKGRPNISHQEKFPDSYLIEEAQKILGS
TVTVDQKTVTAKEKPSVFYQQALPEGGLSAEDLQVDQNIAIPMVTSASFSQREKPQVFYQ
EALSGGHLPGEPPGPPDQNTEAPTISPSSYFPGEESIIFYQAGFPGNTPSVVPFKVSRIS
ELAEQKTNITTGPSGSYSVGEKSIIFYHQALPDGHLSKEASPAPADLKTGEPPVYSASCS
VEVKPIIFYQQPLSDSPLTKGHNVSVVPGPTDQKTGIPAVPSTSQSYIERRSVSYQQEFP
NVSEKALKVLGGVRSTEQKTEIPVVSSALLHTEVPTISSQEDLPNLTEEALQILGVAEEV
PSVPSRDKTRLISYQKKLPDGTEVSLKSVGFGSTDQKTGAHIVSSSRREKSSGFHQQELP
NTCGDALGTFHPEPVAQKVGKPTEPSNIQGKASALSPQQLPASHLTGEALKVSDGSACVA
QMPEAPAGPSIFYFHKERFSNYQKASPDCDLTENSLKSSTVPGLSDQKKRPPVSSGSCSH
KEKHKISAADLLDAQAAELPTVIQRSCLHREKLAISTVIKPDDPKIPLPTTCHASCAQKV
KPVIFVQKQLSGRDQSEDIPKISTVSEPTVANTGAPVLLSSSYPYREKSDFSSPKELPDR
HPAKVDMQASSSLGQADQISRLPTVPPGTYSHSEKYQLISEHVQELIDNLNSSESCLNAD
IMMPSNSQIDDGVIICKPESSRFANVGCEEIQDIDHGSKTLKEIQTLLMEAENMALKRCN
FSVPLVPFRDVSDVSFVQSKKVVCFKETPTSDVCIQKDSFAEEVPHTKYVQKDIGTQTNL
KYQRNVRNWEFISSATFRSPLHEANGTARVAFDENFRQYRATRSVMRSEPEDCSTGIGDK
IIIPMMTIIKSDSSSDVSDGCCSWDNNLPESLESVSDVFLNFFPYTSPKTSITDSREEEG
LSESEDGYGSADSLAAHVKYLLQCESSLNQAKQILKNAEEEEYRVRAQAWNLKFNLGRDY
GYPVSELNEDDRRKVEEIKAKLFGHGRTTHVSEVLQSPRGIGCLPEAVCGHIIIESHEKG
CYRTLTAEQPRPDSCHCVFRSVDPSDLIRGHRSPSSWRGRHINLSRSIDQSNPHFKIGNS
FQLQSHPPFEKLVPDDIKISKGVGMPFHEHMDPQPSELIEPTCVPAKEMDFSSSSEILPS
EPKKQFTTSITFSSHQHSKCISDSSGFKVDVTAGSQCTGPSLGVFKPHIPEEQISPRDLK
QKISSPSSLQRHSYTPVTILVDSSRQRQKLPVDFEHSNQKGKLLQRSAFNFSHSEPSVST
NVSFKGVQFSGNDTIVRQDKLISTVEVKEKNVTLTPDLPSCIFLEQGEESHTPHTDLHMR
KCPSPSGLDIASCIFLEQHKFFEQSQGQHVDDHEMREDYSLFPKCQGYIAADPSDFPDQQ
QCKPPGVDGHVRKQHYPLSPVQDCEVEEVQCIPQSYFSNMVNVEAKVSDMVSPDAPDHFT
AASTPPSSRKALSCVRITLCPKTPSKLDSGTLDERFHSLDPASKTRINSEFNSDLRIISS
RSLEPTSKLLTCKPVAQDQESLVFLGPKSPLDLQVAESSLPDSKTISQDLKTTPPQNSQI
VTSRQTQVNISDLEEYSKPEGTPVPADGSQEQNKAPFTTSSGMLSSDAVTQVTTESPEKM
TFSSEIFINADDRGQDIPYPTTQNPSRFASSSSGQQITASQGKDAQPVLLPYKPSGSSKM
YYVPLLKPVPSYLDSKSDTTVESSHSGSNDAIAPDFPPQVLGTRDDDLSTTVNIKHKEGI
YSKRAASKGKQPSQKGNAEAPVQMPVTWDKNVYKENQDEIISRRVVIETAGPEEMPSQEK
DLAGSSDITVQDRKTGNLPDAKSIKQKEGSLEIEPECHSEFANTTHSVFRSASFYFHHPV
HLPQEQDLCRESSGRNVLTQHPWKDLFHCHSGHSGLPPPGPRSDNTEMECTRVKSLSMDL
NLGGHEKIHTIKNQARDTKEDKRPANDPKKDQKVTPELTSQCPMSLNELWNKYQERQKQQ
KPSGACDNKELSLVERLDRLAKLLQNPITHSLQASESTQDDRRWGRGARGWTGRRQHQQK
GKQQRKWSKSLERGHSTGDFRKSKVLSPHEGGKSSQRNIEKIKLDKYILRKQPDFNNVSN
TSLDSRPSEESELLLTDSPNLFSSTESPVESDVLTHTGRDMPLNERSSSISTVDTARLIQ
AFGHDRLYLSPRQIKLYSSVTNQRRKHLEKPCKHKRKALNTACPQMTSEHTRRRHVQVAN
RIMSSDSVSSAGSCLSLDSTLSNEENVHMLNKGVQAGNLEIVTGAKKYTQDVGVTFPTPS
SSEARLEEDSDMTSWSEEKAKEKKFLSNYLRGKNLRKNKPNPCEGVSWFVPVENRKSESK
KENLPKIYRPAISWFEPVTQTKPWREPLREQNWQAQCMNSRGSLGGPGRDSGQSFLQPFV
RATLQESLQLHRPDFISRSGERIKRLKLLVQERKLQNLFQNEREALFNTARPLPRRVLLA
VQKNKPIGKTEMIRRTRRFYEQLPEVKKKREEEKRKSEYTSYRLRAQHYKMKVTNHLLGR
KVPWD
NT seq
9738 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaggacctgccatggcctgacgagctggaagaggaggaagaggaggaggaa
gaggaagggaaggaggaggcggagaatgcatcagcggcagcgaccgaggaggcccggacc
tctgaggagactgggagactggaagaggaagagttggaaggggcgggtccggaggtggac
ttggattttaacagcgagtcccagctgcaagagagcacggacgaagaggaggacgagctg
gctaaagcctggctgcaggctcaccctgaccgtcctggccaaggtttctctctgaccccg
cctccgactccgcctccgtcctcccggcaccagtacaggccggtagagcactggggcaag
agggaggttattccactgacttaccgtgcatggcagcagacatcataccaagataatgct
agagcccagttttccaactccagtacattgttattggagccagaatttcagtgggaccct
gaggaggttcagagaacagagtcttggcatcatcttcctcaagaaagggattctttccaa
accttgaatatatcccagactgggatcgacagagtagaaggagcagaagtaaaagacttg
ccctctcaggagggaggtgaatcggttcaggcacagtgtccagtaaaggaaccaaagctg
gatctcttgtgttctccattgctagtgatacaggatgactttgctgctcctgatttgccc
ttgctgacatgtatgacccaagaccaggagtttgaacctgattccttgtttcaacaaagt
gaactggaatttgcacctttgagagggattcctgataagtctgaagatattgaatggctt
gctcgaccgtcagaagttagtgaagctttaatccaggccacctcagaatcatcttcagac
ttagttaacagttgctttagtatatctcagcatccactcacagagggcctgcaggggaag
gctaaatctgatgtccttattctgtttggtgatgctaaatacgccagcatatatgaaaat
gctggtgcacacagtgaaagaattaccgaattgcaaagagaggtagactgttctaatctg
agcattacccaggcttttccatcttccttgccttcatttgttcctcaagaaccgaccatt
gagtcagaatatcattcctccaatctcagaatgttgagagtatctcccgacactctgctg
acaactcttacacagacaacaggatctgttgaccagaagattggagcagctgcaatctct
tctccttactcacatggagtacagcctggcagctttccccaagaagagttgccagatagg
catcttaccgaagagattcggaaagtgtcacctgctcctaggccagctggccagaagcct
gagatgccaacagtaccatctagttcttactctaagggaataaaatctgttttctatcga
tatccgatgtcatacagtcctcaaggcaaagagcctccaaatgtttcatctgtttctgga
tcagctgagaatgccctgcccctaacagtaacctctgtttcccagccacagagagagaca
gctaaagctttctaccagcaaacattatcagacagtcttctaactgcagaaacattgcca
gtttctgttattcctgaatcaggtgaccagaagactcatttgctatcagggttctctctc
tcatattctcacagaggagaggacctgcctgaagatgtagtgaaagtttccactgattct
ggatctgttgacaagaaggctgacattccaacagtgtcctctagtacctaccagcacaaa
acaaaacctggtattatttactaccaagagtttccagacagccatgtgcctatagggact
agaaaggttgtatctcagtcaggagcagctggccagaagactgatctatcagcagtgccc
tctacttcctcttcacaggcagagaagcctgttcccccctccctgctaactttgctaggt
agtcatctacctgaagatgttttcaaagcttcttatgtttgtaagtcatctgaagagcca
tctggaataacagctctgacctctgtttcctactcatataaagggagacccaatatttct
catcaagagaagtttccagacagttacctaattgaagaggcccagaaaatcttgggttca
actgtaacagtagaccagaagacagtgacagcaaaagaaaagcctagtgttttctaccaa
caggccttgccagaaggtggtctatctgcagaggatctgcaagttgaccagaacattgct
ataccaatggtaacttctgcttccttctcacaaagagaaaaacctcaggttttctaccaa
gaggcgctctcaggtggtcatttgcctggagagcctcctggaccgcccgaccagaacact
gaggcaccaacaatatcgcctagttcctacttccctggagaagagtccattattttttac
caagctggctttccaggtaacactccatctgtagtgcctttcaaagtttcaaggatttct
gaattagctgaacagaagactaacataacaacaggaccatcaggttcctactcagttgga
gagaagtccattattttctaccatcaggccttgccagatggtcatctttctaaagaagct
tctcctgcaccagctgacctgaagactggggagccaccagtatattcggcttcctgttct
gttgaggtaaagcccattattttctaccagcagcctctgtcggatagtcccctaactaaa
ggtcacaacgtttcagttgttcctggaccaactgaccagaagactggtataccagcagtg
ccttctacttcacagtcatatatagagaggcgttctgtttcttaccagcaagagtttcca
aatgttagtgaaaaagctttgaaagttctaggtggtgttagatccactgaacagaaaact
gaaataccagtagtgtcttctgctctcttacacacagaggtacctactatttcttcccaa
gaggatttgccaaatcttactgaagaagctttgcaaattttaggtgttgctgaagaagtt
ccttctgtcccttcacgtgataagacacgtctcatctcttaccagaagaagttaccagat
ggtactgaagtatctttgaaatcagtaggctttggctctactgatcagaagactggggca
cacatagtctcctcctcaagaagagagaagtccagtggttttcatcagcaggagttgcca
aatacttgtggggatgcattaggtacttttcatcctgaaccagttgcccagaaggttgga
aaaccaacagaaccttccaacatacagggaaaggccagtgctttgtctccacagcagttg
ccggccagccatcttacaggagaggctctgaaggtgtcagacggttctgcctgtgtggca
cagatgcctgaggcaccagcaggaccgtccattttctacttccataaagaaaggttcagt
aattatcaaaaggcctcaccagattgtgatctaactgaaaattctttgaagtcttcaact
gttcctggattgtctgatcagaaaaagagacctccagtctcatctggttcctgttcacac
aaagagaaacacaagatttcggctgcagatttgctggatgcccaggcggctgaactgcca
acagttattcagagatcctgcttacatagagaaaagctggcaatttcaactgtgatcaaa
ccagatgacccaaagattccattaccaacaacttgtcatgcctcctgtgctcaaaaagta
aaacctgttatttttgttcaaaaacagttatcaggtagagatcaaagtgaagatattccg
aagatttcaactgtctctgagccaactgttgcaaacacaggtgcaccagtacttctgtct
agttcttacccatacagagagaagtcagatttctcttccccaaaggaactgccagataga
catccagctaaagttgacatgcaggcttcaagcagtcttggacaagctgaccagatttct
aggttacctacagttcctcctggtacttattcacacagtgaaaagtaccagcttatctca
gagcatgtacaagagctgattgataatttgaattcttctgagtcttgtctcaatgcagac
attatgatgccttcaaattcacaaattgatgatggagttatcatatgtaagccagaatct
tcacgttttgccaatgttggctgtgaggaaatccaggatatagatcatggttccaaaact
cttaaagaaattcagactctcttaatggaagcagaaaatatggcactaaaacgatgcaat
ttctctgttcccttagttcctttcagagatgttagtgatgtttcatttgtacaatcaaag
aaggtggtttgcttcaaagaaacccccacatctgatgtttgtatccagaaggactcattt
gcagaggaagtcccacacactaagtatgtacagaaggacatcggtacacagacgaacctt
aagtaccagaggaatgttagaaattgggaatttattagttcagctacctttagaagtcct
ctacatgaagcaaatggcacagctcgagtggcatttgatgaaaatttcaggcaatataga
gctaccaggtctgtaatgaggtctgaacctgaagactgcagcacaggcattggggataaa
attattatccctatgatgacaatcataaagagtgactcgagtagtgatgtaagtgatggt
tgctgctcatgggacaataatttaccagagtctttggaatctgtttctgatgtttttcta
aacttctttccgtatacttcacccaagacaagcataacagatagccgagaagaggagggc
ttgtcagagagtgaagatggctatggtagtgcagattcattggctgcacatgtgaagtac
cttctgcagtgtgaatcctcactgaatcaagccaaacagatacttaagaatgcagaagag
gaggaatatcgagtccgagcccaagcctggaatctaaagttcaatttaggacgtgactat
ggataccccgtttcagagttaaatgaagatgacaggaggaaagtagaagagataaaggca
aagttgtttggtcatggaagaacaactcacgtgtctgaggtcttacagagtccacgagga
ataggatgtttgcctgaagctgtatgtggtcacattattattgagagccatgagaaagga
tgttacaggactcttactgctgaacaaccacgaccagacagctgccattgtgtttttcga
tctgttgatccttcagacttgattagaggacatcggagcccatcatcatggagaggcagg
cacatcaacctttccagatcgatagatcagagcaatccccatttcaaaatagggaattcc
tttcagttacagagtcatcccccatttgaaaaacttgtacctgatgacatcaaaattagc
aagggtgttggaatgccattccatgaacacatggatccccagccatcagaattaatagaa
cctacttgtgtgccagctaaagaaatggatttttcttcctcttctgaaatactgccctct
gaacccaagaagcagttcaccacttccatcactttttcttctcaccaacactctaagtgc
atttctgattcctctggttttaaggttgatgttactgcaggtagccagtgtactgggcca
tctttaggggtgtttaagcctcatatccctgaagagcagatttctcctagagatcttaaa
cagaaaatctcgtccccttcatcacttcaaaggcatagttacacaccagtgactatttta
gttgacagtagtaggcaaagacaaaaattacctgttgattttgagcattctaatcaaaaa
ggaaaactcttacaaagatcagcttttaattttagccattctgaacccagtgtcagtaca
aatgttagtttcaagggagttcaattttctggtaacgataccatcgttaggcaggacaaa
ttaatttccacagttgaggtaaaagagaagaatgtaactttaactcctgatcttccttct
tgcatttttcttgagcaaggagaagaaagccacaccccacacacagatcttcatatgagg
aagtgcccttctccctctggtctagacattgcttcttgcatttttcttgagcagcacaaa
ttctttgagcaaagccaaggccagcatgtagatgatcatgaaatgagagaagactactct
ctcttccctaagtgccagggttacatagctgcagacccttctgactttcctgatcagcag
caatgcaaacctccaggtgtagatggccacgtgagaaaacagcactatcctctttctcca
gttcaggattgtgaggtagaagaggttcagtgtataccccaatcatacttttctaatatg
gtaaatgttgaagccaaggtcagtgatatggtctcccctgacgcccctgaccactttaca
gcagcatctactccaccttcaagtagaaaagcactttcatgtgttcgcataactctttgt
cccaagactccttccaagttggatagtggaaccttagacgaaaggtttcattcattggat
cctgcttctaaaacaaggattaatagtgagtttaactctgatcttcgaattatatcttca
aggtcattggaaccaacctccaaattactgacctgtaaaccagtagcacaggatcaagaa
tctttagtttttctaggacctaaatctccactggacttgcaagtcgcagagtcttctctt
ccagatagtaagactatttctcaggacttgaaaaccacacctcctcagaatagccagata
gtaacctcaaggcaaacacaagtgaacatttcagatttggaagaatattccaaaccagag
gggactccagtacctgcagatggttcacaagaacagaataaggctccctttactacatcc
tctggaatgttatcatctgatgcagtcactcaggtaacaacagaaagtccagaaaagatg
acattttcatctgaaatttttattaatgctgatgatcgtggacaggacattccatacccc
acgacccaaaatccatccaggtttgcctcctcttcctcagggcagcaaatcacagcttct
cagggcaaagacgcccagcctgtgttgttgccatataagccatctggtagttcgaagatg
tactatgttccactgttaaaaccagttccgtcatatctggattccaaatcagatactact
gttgagagctcacattcaggctccaatgatgctattgccccagactttccacctcaagtg
ctaggcacaagagatgatgacctctccaccactgtaaacattaagcacaaagaagggatc
tatagcaagagggctgcatcaaaggggaaacaaccctctcagaaaggtaatgcagaggcc
ccagttcaaatgcctgtaacttgggataagaatgtctataaggaaaaccaagacgagatc
atcagtagaagagttgtgatcgagacggcaggacctgaagaaatgccatcccaggagaag
gaccttgcaggatccagtgatatcactgtgcaagacagaaaaactggaaatctgccagac
gctaaatccattaaacagaaggaaggatccttagagatagagcctgagtgtcactccgag
tttgcaaacaccactcactctgtcttcaggtcagccagcttttacttccaccacccagtg
cacctgccccaagagcaggatctctgccgcgagtcttcgggaaggaatgttctcacgcag
catccttggaaggatctctttcactgtcattcagggcacagcggcctcccgccccctggc
ccaaggtcagacaacactgagatggagtgcaccagagttaagagcctcagcatggatttg
aatttggggggccatgagaagatacatactatcaagaatcaggccagagacacaaaagaa
gacaaaagaccggcaaatgacccaaaaaaggatcagaaggtcaccccagagctaacaagt
cagtgccccatgagtttgaatgaactctggaacaagtaccaggagcgacagaagcagcag
aaaccatctggcgcttgtgataacaaagagctctccttggtggaacggcttgatcgtttg
gctaaactgcttcagaatcccatcacacattcactccaggcctcagaaagtactcaagat
gaccgcagatggggacgtggagccagggggtggactgggaggaggcaacatcaacagaaa
ggcaagcagcagaggaagtggagtaagagcctagagaggggtcacagtacaggtgacttt
aggaaaagcaaagtgctttctcctcatgaaggtgggaaatccagtcagcgtaatattgag
aagattaaactagataagtacatcctgagaaagcagccagattttaataatgtcagcaat
acctccttggattctagaccctcagaggaaagtgagctcctcctcacagatagtcccaac
cttttttccagcactgagtctcctgtggagtcagatgtattgacccacactggtagggac
atgcctttaaatgagaggagtagctccatttctaccgttgacacagcccggctgatccaa
gcctttggccacgatagactgtatttgtcacccaggcaaattaaattatacagtagtgtc
actaatcaacggaggaaacatctggagaagccatgcaagcacaagaggaaagcattgaac
acagcctgcccccaaatgacttctgagcacaccagaaggaggcacgtccaggtggcaaac
cgtataatgtcttctgactctgtttcatctgctggtagttgtttgagcttggactctact
ctgtccaatgaggaaaatgtgcacatgttgaataagggtgtacaagctggtaacttggag
attgtgactggtgccaaaaaatacactcaggatgttggggtgactttcccaacgcccagt
tctagtgaggccagattggaagaggatagtgatatgacttcttggtcagaagaaaaagcc
aaagagaaaaagttcctttccaactatctgcggggcaaaaacttaaggaaaaacaagcca
aatccctgtgaaggagtctcatggtttgttcctgtggaaaacagaaagtctgaatctaag
aaggaaaacctgcccaagatttacagacctgctatctcctggtttgaaccagtaacccaa
accaaaccctggagggagccactgagggaacaaaactggcaggcacaatgcatgaacagt
cgtgggtccctgggaggcccaggcagggatagtggccagagttttcttcagccatttgtg
agagcaaccctgcaggaatcacttcagcttcacagacctgatttcatctcccgctctggg
gagcggataaaacgtctgaagctactagtccaggagaggaagctacagaacctgttccag
aatgagcgagaagctctgttcaacactgcgaggcccctgcccaggagagttctcttggca
gtccagaagaacaagcctattgggaagacggaaatgattcggaggaccagacggttttat
gagcagcttccagaagtgaagaagaagagagaagaggagaagagaaaatcagaatataca
tcctaccggctacgagctcagcactataaaatgaaagtgaccaatcatctcctggggaga
aaagtgccttgggactga
DBGET
integrated database retrieval system
