Rattus norvegicus (rat): 297867
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Entry
297867 CDS
T01003
Symbol
Arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform 1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03082
ATP-dependent chromatin remodeling
rno04714
Thermogenesis
rno05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
297867 (Arid1a)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
297867 (Arid1a)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
297867 (Arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
297867 (Arid1a)
03021 Transcription machinery [BR:
rno03021
]
297867 (Arid1a)
03036 Chromosome and associated proteins [BR:
rno03036
]
297867 (Arid1a)
Transcription factors [BR:
rno03000
]
Eukaryotic type
Helix-turn-helix
ARID
297867 (Arid1a)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
297867 (Arid1a)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
297867 (Arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
297867
NCBI-ProteinID:
NP_001388207
RGD:
1310500
Ensembl:
ENSRNOG00000006137
LinkDB
All DBs
Position
5:complement(151192014..151269291)
Genome browser
AA seq
2291 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAAERGEMKAAAGQESEGPA
VGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG
GGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAA
LQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGSGA
AAAGSKPPPSSSASASSSSSSFAPQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSS
ARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP
GSSGGGGQPLARTPQSSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGS
QTPQRYPMTMQGRAQSAMGSLSYAQQIPPYGQQGPSAYGQQGQTPYYNQQSPHPQQQQQP
PYSQQPPSQTPHAQPSYQQQPQTQQPQLQSSQPPYSQQPSQPPHQQSQTPYPSQQSTTQQ
HPQSQPPYSQPQAQAPYQQQQPQQPASSTLSQQAAYPQPQPQQSQQTAYSQQRFPPPQEL
SQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVST
SGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQ
MPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYTSPQPGSALSPRQPSGGQMHS
GMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPSAGMAGSMNPLGAGGQMHG
QPGIPPYGTLPPGRMTHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQESAVAMHV
AANSIQNRPPGYPNMNQGGIMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAA
SPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMW
VDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG
TSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQG
PQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSEPTFQKRN
SMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGGMRKAPGSDPFMSSGQGPNGGMGDPYSRA
AGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSTPDSGMYSPSR
YPPQQQQQQQQQQQQQQQQQQRHDSYGNQFSTQGTPSSSPFPSQQTTMYQQQQQQNYKRP
MDGTYGPPAKRHEGELYSVPYSTGQGQPQQQQLPAAQSQSASQPQAAQPSPQQDVYNQYS
NAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMGGPIQASAEVA
QQGTMWQGRNDMTYNYANRQNTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQ
PPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMK
MQKAGPPVPASHIAPTPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRV
MMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILK
EYEVGDPGQRTLLDPGRLTKVSSPAPTEEEEEEEHVDPKLEEEEEEGVENDEEMAFLGKD
KPPSEKSEEKLVSKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEH
IQTHFESKIELLPSRPCVPSPVPPRKHVTTVEGTPGTTEQEGPPPDGLPEKRITATMDDM
LSTRSSTLTDEGTKSTEANKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQ
DSLAKRCVCVSNAIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKE
EEQDQGVSCDKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVC
PSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRF
LSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQAS
LLHMQSPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQV
ICDVLFLIGQS
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagccgagcagcaacagcgggaggaggcggggggcgaggcggcggcg
gcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgct
gtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggt
ggcggcggcggcggagccggcagcggcggcgggcccggcgcggagccggacctgaagaac
tcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggc
ggcggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggccgccctg
ccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgccgcc
gcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggcagcg
ctgcagagcggcggtggcgggggcctggagccctacgccgggccccagcagaactcgcac
gaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctacccc
ccgcctccccaggcctacgcgctgagctccccgagaggtggcactccgggctccggcgcg
gcggccgcgggctccaagccgcctccctcctccagcgcctctgcctcctcgtcgtcttcg
tccttcgctccgcagcgcttcggggccatggggggaggcggcccctcagcggccggcggg
ggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagctcg
gcccggggctaccagggctaccccgggggcgactacggcggcgggccccaggacgggggc
gcgggcaagggcccggcggacatggcctcgcagtgctggggggctgctgctgcggcggcg
gcggcagcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagcccc
gggagcagcggcggcggggggcagccgctcgcccggacccctcagtcatcgagtccaatg
gatcagatgggaaagatgagacctcagccgtatggtgggactaacccatactcacaacaa
cagggacctccttcaggaccgcaacaaggacatgggtacccagggcagccatatgggtcc
cagactccacagcggtacccgatgaccatgcagggccgggctcagagtgccatgggtagc
ctctcttatgcacagcagattccaccttacggacagcaaggccccagtgcctatggtcag
cagggccagactccgtactataaccagcaaagtcctcatccccagcagcagcagcagcca
ccttactcccagcagccaccgtctcagacccctcatgcccagccttcatatcagcagcag
ccgcagactcagcaaccacaacttcagtcctctcagcctccatattcccagcagccttcc
cagcctccacatcagcagtcccaaactccatatccctcccagcagtccaccacacaacag
cacccccagagccagcccccctactcacagccacaggcacaggctccctaccagcagcag
caacctcagcagcccgcatcctcgacgctctcccagcaggccgcgtaccctcagccccag
cctcagcagtcccagcaaactgcctattcccagcagcgcttccctccaccacaggagctt
tctcaagattcatttgggtctcaggcatcctcagccccctcgatgacctccagcaaggga
gggcaagaagatatgaacctgagtcttcagtcaagaccctccagcttgcctgatctgtct
ggttcaatcgatgatctccccatggggacagaaggagctctgagtcctggcgtgagcaca
tcagggatttccagcagccaaggagaacagagcaatccagctcagtctcctttttctcct
cacacctcccctcacctgcctggcatccgaggcccgtccccgtcccctgttggctctcct
gccagtgtcgctcagtctcgctcaggaccactctcgcctgctgcagtgccaggcaaccag
atgccaccccggccacccagtggtcagtcggacagcatcatgcacccttccatgaaccaa
tcaagcattgcccaagatcgaggttatatgcagaggaacccccaaatgccccagtacact
tcccctcagcccggctcggccttatctccacgtcagccttctggaggacagatgcactcg
ggcatgggctcctaccagcagaactccatggggagctatggaccccaggggagtcagtat
ggcccacaaggaggctatcctaggcagcctaactataacgccttgcccaacgccaactac
cccagtgcaggcatggctggaagtatgaacccgctgggtgctggaggtcaaatgcacggg
cagcctggaatcccaccctacggcacactccctccaggaagaatgactcatgcgtctatg
ggcaacaggccttatggccctaatatggccaacatgccacctcaggttgggtcagggatg
tgtcctccaccaggggggatgaaccggaaaactcaagaatctgctgttgccatgcatgtt
gctgccaactctatccaaaacaggccaccaggctacccaaatatgaatcaaggaggcatc
atgggaactggacctccctatgggcaggggattaatagtatggctggcatgatcaaccct
cagggacccccatatcctatgggtggaaccatggccaacaattcagcagggatggcagcc
agcccagagatgatgggccttggggatgttaagttaactcccgccacaaaaatgaacaac
aaggcagatgggacacccaagacagaatccaaatctaagaagtccagttcttctaccacc
accaatgagaagatcaccaaattgtatgagttgggtggtgagcccgagaggaagatgtgg
gtggaccggtacctggccttcacagaggaaaaggccatgggcatgacaaatctgcctgct
gttgggaggaagcctctggacctctatcgcctctatgtgtctgtgaaggagattggtggg
ctgactcaggtcaacaaaaacaaaaaatggcgggaacttgcaaccaacctcaatgtgggc
acatcgagcagtgccgccagctccttgaaaaagcagtatatccagtgtctctatgccttt
gagtgcaagattgagcggggagaagaccctccccctgatatctttgcagctgctgattcc
aagaagtcccaacccaagatccagcctccctctcctgcaggatcagggtctatgcagggg
ccacaaacgcctcagtcaaccagcagttctatggcagaaggaggagacctgaagccacca
actccagcatccacaccacatagtcaaattccccccttaccaggcatgagcaggagcaac
tcagttggaatccaggatgcctttcctgatggaagtgagcccacattccagaagcggaat
tccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatggggcgc
atgtcctatgagccaaataaggatccttatggcggcatgaggaaagctccaggaagtgat
cccttcatgtcctcagggcagggtcccaacggcgggatgggtgacccctacagccgtgct
gctggccctgggctgggtaatgtggctatgggaccacgacagcactatccctatggaggt
ccttacgacagagtgaggacggagcctggaattggccctgaaggaaatatgggcactgga
gcccctcagccaaatctcatgccttccaccccagactcggggatgtattctcctagccgc
taccccccgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
cagcgacacgattcctatggcaatcagttctccacccaaggcaccccttccagcagtccc
ttccccagccagcagaccacaatgtatcagcagcagcagcagcagaactataagaggcca
atggatggcacgtatggccctcctgccaagcggcatgaaggggagctgtacagtgtgccg
tacagcactgggcaggggcagcctcaacagcagcagctgcctgcagctcagtcccagtct
gccagccagccacaagctgcccagccttcccctcagcaggatgtctacaaccagtacagc
aatgcctaccctgctactgccaccgctgctactgagcgccgaccagcaggcggcccccag
aaccaatttccattccagtttggccgagaccgagtctctgcacctcctggttccaatgcc
cagcagaacatgccaccacagatgatgggcggccccatacaggcatccgctgaggttgct
cagcaaggcaccatgtggcaggggcgaaatgacatgacctacaattatgccaacaggcag
aacacaggctctgccccccagggccctgcttatcatggtgtgaaccgaacagatgagatg
ctccacacagaccagagggccaaccatgaaggcccgtggccttcccatggcacgcgccag
cctccctatggtccttcagcccctgttccccccatgacaagaccccctccatctaactac
cagcccccaccaagcatgcagaatcacattcctcaggtatccagtcccgctcccctgccc
cggcccatggagaaccgtacttctcctagcaagtctccattcctgcactctgggatgaaa
atgcaaaaggcaggtccaccagtgcctgcttcgcacatagcgcctacccctgtgcagccg
cctatgatccggcgggatatcacctttccccctggctctgtggaggccacacagcctgtg
ctgaagcagagaaggcggctcacgatgaaagacattggaaccccggaggcatggcgggta
atgatgtccctcaagtccgggctcctggcagagagcacgtgggcgttagacaccattaac
atcctactgtatgatgacaacagcatcatgaccttcaacctcagccagctcccagggttg
ctagagctccttgttgaatatttccgtcgatgcctgattgaaatctttggcattttaaag
gagtatgaggtaggggacccaggacaaagaacactgctagaccctgggagattgaccaag
gtgtctagtccggcccccacagaggaagaagaggaagaggaacacgtagatcccaagctg
gaggaggaagaggaggaaggggttgaaaatgatgaggaaatggcctttttgggcaaggac
aagccaccttcagagaagagtgaggagaagctagtcagtaagtttgacaagctcccggta
aagatcgtgcagaagaatgacccgtttgtggtggactgctcagataagcttgggcgcgtg
caggagtttgacagtggcctgctgcactggcggattggtggtggggataccactgagcac
atccagacccactttgagagcaagatagagctgctgccttcccggccttgtgtgccctcc
ccagtgccccctcggaaacacgtcacaacagtagagggtacaccagggacaacggagcag
gagggtcccccgcctgatggccttccagaaaaaaggatcacagccactatggatgacatg
ctgtccacccggtctagcacattgactgacgagggaacaaagagtacagaggccaacaag
gaaagcagcaagtttccatttggcattagcccagcacagagccaccggaacatcaagatt
ttagaggacgaaccccatagtaaggatgagaccccactgtgtacccttctggactggcag
gattcccttgctaagcgctgtgtctgtgtctctaatgccatccggagcctgtcatttgtg
ccaggcaacgactttgagatgtccaaacacccagggctgctgcttatcctgggcaagctg
atcctcctgcaccataagcacccagaacggaagcaggcgccactgacttatgagaaggag
gaggaacaggaccaaggggtgagctgtgacaaagtggaatggtggtgggactgcttggag
atgctccgggaaaacactctggtcacccttgccaacatctcggggcaattggacctatcc
ccataccctgagagcatctgcctgcctgtcctggatggactcctacactgggcagtttgc
ccttcagctgaagcccaggaccccttctcaaccctaggccccaatgccgtcctctctcct
cagagattggtcttggaaaccctcagcaaactcagcatccaggacaacaatgtggacctg
atactggccacgcccccttttagccgcctggagaagttgtatagtaccatggtgcgcttc
ctcagtgaccgaaagaacccagtgtgccgggagatggccgtggtactgctggcaaatctg
gcacagggggacagcctggcagcccgggccattgcggtgcagaagggcagcatcggcaac
ctcctgggttttctggaggacagccttgctgccacccagttccagcagagccaggccagc
ctcctccatatgcagagcccaccctttgaaccaactagtgtggacatgatgcggcgggct
gcccgagcgctactcgccctggccaaggtggacgagaaccactcagagttcactctgtac
gagtcacggctgttggacatctccgtgtcaccactgatgaactcactggtttcacaagtc
atttgcgatgtactgtttttgattggccagtcatga
DBGET
integrated database retrieval system
