Rattus norvegicus (rat): 298510
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Entry
298510 CDS
T01003
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
298510 (Pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
298510 (Pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
298510 (Pabpc4)
03041 Spliceosome [BR:
rno03041
]
298510 (Pabpc4)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
298510 (Pabpc4)
mRNA cycle factors
Stress granule specific factors
298510 (Pabpc4)
Spliceosome [BR:
rno03041
]
Complex C
Other components
Complex C specific factors
298510 (Pabpc4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_MUD2_C
RRM_5
RRM_ACIN1
RRM_occluded
RRM_7
RRM_10
RBD_RDR6
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
298510
NCBI-ProteinID:
NP_001094008
RGD:
1305015
Ensembl:
ENSRNOG00000015642
UniProt:
A0A8J8XGC4
LinkDB
All DBs
Position
5:140847835..140864089
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AA seq
644 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEK
HEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSALRQSGPRPALRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHPAIQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAAATS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccttatacgtgggcgatctgcactcc
gatgtcaccgaagccatgctgtatgaaaagttcagccctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctctctgggttatgcctacgtcaacttccag
cagccagctgacgctgagagggccttggacaccatgaactttgatgtgattaaggggaag
ccaatccggatcatgtggtctcagagggacccctctttgaggaagtctggtgtgggaaat
gtcttcatcaagaacctggacaagtctatagacaacaaggcactgtatgacactttctct
gccttcggaaacatcctgtcctgtaaggtggtctgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccaacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgttcgtgggcagattcaagtctcgcaaagagcgggaa
gccgagcttggagccaaggccaaggaattcaccaatgtttatatcaaaaactttggagaa
gaggtggatgatgagaatctgagggagctattcagccagtttggtaagaccttaagtgtc
aaggtgatgagagactgcagtgggaagtccaaaggcttcggcttcgtgagctatgagaaa
catgaggatgccaataaggctgtggaagaaatgaatggaaaagaaatgagtgggaaatcc
atatttgtaggccgtgctcagaaaaaagtagaacgtcaggcggagttaaaacggaaattc
gaacagctgaagcaggagaggattagtcggtaccagggagtgaatctctacattaagaac
ttggatgacaccattgacgatgagaagttaaggaaagagttctcaccctttggatcaatc
accagtgcgaaggtgatgctggaagacgggagaagcaaagggtttggctttgtctgtttc
tcctctcctgaagaggcaaccaaagcggtcacggagatgaacggacgcattgtgggctcc
aagcctctgtacgtcgccctggcccagaggaaggaggagcggaaggctcacctgactaac
cagtatatgcagcgtgtggcaggaatgagagcgctccctgccaacgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgccggcagtgccacaggcccagggaagacct
ccatattacacacctaatcaattagcgcaaatgaggcctaatccacgctggcagcaaggc
gggagacctcaaggcttccaaggaatgccaagtgccctgcggcaatctgggcctcgtcca
gctcttcggcatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggcgtccct
acggctgtgccaaaccttgcacctcgtgctacagtcgctgctgctgctcccagggctgtg
gctccatacaagtatgcctccaatgtccgcagccctcaccctgccattcagccgctgcag
gccccccagcctgcagtccatgtccagggtcaagaacccctgactgcctccatgctggct
gcagctcctccccaggagcagaagcagatgctgggggagcgtttgttcccacttatccaa
acaatgcattcaaacctggctggaaaaattacagggatgctgctagaaatcgacaactct
gagctgctccacatgctggagtcccccgagtccctccgttccaaggtggatgaagctgtg
gcagtcctgcaggctcatcatgccaagaaagaagctgcccagaaggtgggcactgttgct
gctgctacctcttaa
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