Rattus norvegicus (rat): 299256
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Entry
299256 CDS
T01003
Symbol
Cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
299256 (Cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
299256 (Cpsf2)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
299256 (Cpsf2)
U7-dependent histone pre-mRNA processing factors
299256 (Cpsf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
299256
NCBI-ProteinID:
NP_001100223
RGD:
1309687
Ensembl:
ENSRNOG00000005733
LinkDB
All DBs
Position
6:126885417..126917634
Genome browser
AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDVDQPTAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCVSATESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSVIAQQKAMKSLFGDDEKELGEESEVIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcatcaagttaactaccctctctggggtccaagaggagtctgctctttgc
tatcttctccaggttgatgagtttagatttttgttggactgtggctgggatgaacacttc
tctgtggacattattgattccctgaggaagcatgttcaccagatcgatgcagtgctcctg
tctcaccccgacccactccacctcggtgccctcccgttcgctgtggggaagctgggtctg
aactgtgccatctatgcaacaattcctgtttataaaatgggccagatgttcatgtacgat
ctttatcagtctcgacacaatacagaagattttaccctctttacattggacgatgtggat
gcagcctttgataaaatacagcagctaaaattctctcagatcgtgaacctgaaaggcaaa
ggacacggtttgtcgatcacacccctgccagctggtcatatgataggaggaacaatatgg
aaaatagtcaaagacggagaagaagagattgtttatgccgtggacttcaaccacaagagg
gagattcacctaaatggatgttccctggaaatgctaagcagaccctctctgcttatcaca
gattcatttaatgctacttatgtgcagcctagaaggaaacagagagacgagcagctcctg
acaaacgtcctggaaactcttcggggcgatgggaatgtgctcatagccgtggacacagca
ggcagagttctggagcttgctcaacttcttgatcagatttggagaactaaagacgcgggg
ttgggcgtttattcgctggctctcctgaacaacgtcagttacaacgtggtggagttctct
aagtcacaggtagaatggatgagtgataaattgatgagatgttttgaagacaagagaaat
aacccatttcagtttcgccatctctctctgtgccacggtctttctgacttggctcgggtt
ccaagccccaaagttgtacttgccagtcagcctgacctggagtgtggattctcaagggac
ctctttattcagtggtgtcaggaccctaaaaactcaatcatcctaacttacaggacaact
ccgggaaccttagcacgtttcttaattgataatccttctgagaaagttacagaaatagag
ctgaggaaacgcgtgaagcttgaagggaaagaacttgaggaatatgtggaaaaagagaaa
ctaaagaaagaagctgctaagaaactggagcagtcgaaagaggcagacatcgactccagt
gacgagagtgacgtggaggaagacgtcgaccagccaacagctcacaaaacgaagcacgac
ctgatgatgaagggggaaggcagccgaaaagggagcttcttcaaacaggccaaaaagtcc
taccccatgtttcctgccccagaagaaaggattaaatgggacgagtatggagagatcatc
aaaccagaagatttcttagtgccagaacttcaggctactgaagaagagaaaagcaaatta
gaatccggcttgacaaatggagaggaacccatggatcaggacctgtctgatgttcccacc
aagtgtgtttctgcaacagagtctattgagataaaagccagagttacttacatagactac
gaaggacgctccgatggagactccattaaaaagatcatcaatcagatgaaaccacggcag
ctgatcattgtccacggcccaccagaggccagtcaggatctggctgagtgctgccgcgca
tttggtgggaaagatatcaaagtgtacatgccaaagctgcacgagacagtcgatgccacc
agcgagacacatatctaccaggtaagattaaaggactcacttgtcagctcgcttcagttc
tgtaaagcgaaagatgctgagttagcatggatagacggcgtcttagacatgagagtctcc
aaagtggacacgggagttattttagaagaaggagaactcaaggatgatggagaagactct
gaaatgcaagtggatgctccttcagattccagtgtcatagcccagcagaaggccatgaaa
agtctgtttggagatgatgagaaagagctgggtgaggagagtgaggtcatccccacactg
gagcctttgccacctcatgaggttcccggacaccagtcagtttttatgaatgaaccgaga
ctgtctgacttcaagcaagttcttttgcgggaagggattcaagcggaatttgtagggggc
gtacttgtctgcaacaatcaagtagcagtccgcagaacagaaactggacgcatcgggcta
gaaggctgcctttgtcaagacttttataggatacgagaccttttatatgaacagtatgcc
attgtgtaa
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