Rattus norvegicus (rat): 300121
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Entry
300121 CDS
T01003
Symbol
Smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04110
Cell cycle
rno04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
300121 (Smc1b)
04114 Oocyte meiosis
300121 (Smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
300121 (Smc1b)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
300121 (Smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
300121 (Smc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_29
AAA_15
Ca_chan_IQ
ABC_tran
Motif
Other DBs
NCBI-GeneID:
300121
NCBI-ProteinID:
NP_001123970
RGD:
1308791
Ensembl:
ENSRNOG00000032570
UniProt:
A6HTD3
D3ZE73
LinkDB
All DBs
Position
7:complement(118060898..118122683)
Genome browser
AA seq
1247 aa
AA seq
DB search
MGHLELLLVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKN
IQELIHGAHIGKPVSSSASVTIIYVEDSGEEKTFTRIIRGGCSEFHFGDKPVSRSVYVAQ
LENIGIIVKAQNCLVFQGTVESISMKKPKERTQFFEEISTSGEFIGEYEAKKKKLQKAEE
DAQFHFNRKKNVAAERKHAKIEKEEAEHYQSLLEELKTNKIQLMLFQLYYNEEKINVLNT
ELEHMDRNLSVVKDTLSHHENIIKAKKKDYGMLTRQLQQTAKELKSVEAVLNQKRPQYIK
AKENTSHHLKKLDLSKKLITDNEKQCAKQEDGIRALVAELVDLDRAWRSFEKQMEEKILH
KGRDIELENSQLDRYKELKEQVRRRVGIMTQQLEKLQWEQKAEKERLAFERRRHGDTQGN
LKQIKEQIEEHKKRIEKLEEYTKTCMDCLEDKKQQEEALIKEIDNTKSRMSEVNEELSLI
RNELQNAGIDNHEGKRQRKRAEVLEHLKRLYPDSVFGRLLDLCHPIHKKYQLAVTKLFGR
YMVAIVVASEKVAKDCIRFLKEERAEPETFLALDYLDIKPINERLREIKGCKMMIDVIKT
QFPQLKKVIQFVCGNGLVCETVEEARHIAFGGPERRKAVALDGTLFLKSGVISGGSSDLK
HKALCWDEKELHSLRDKRNQLVQELKELMKTLRKETDLKQIQALVQGTNTRLKYSQNELE
MIKKKHLATFYREQSQLQSELLNIDSQCTMLSEGINKQQQKIEEFQDKIDKVEDDIFQDF
CEEIGVENIREFENKHVKQQQENDQKRLEFEKQKTRLNIQLEYSRNQLKKKLNKIDTLKT
TIQKGREDIDNLKKTEEECLKIVEELMVKQEQVKEVLATQSSNIEKIHIQIEEERKKFLA
VDREVGKLQKEVVIIQGSLEQKQLEKHNLLLDCKVQDIDISLMLGSLEDIIEVELTETES
TQATADIYEKEASIQIDYSPLREDWKALQSDKEVEAHLTLLLQQVASQENTLLKTAAPNL
RAQENLKAVRDKFQESADAFEASRKEARICRQEFEQVKRRRYDAFSQCFEHISVSIDQIY
KKLCRNNSAQAFLSPENPEEPYLDGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAVH
SFRPAPFFVLDEVDAALDNTNIGKVSGYIKEQSQEQFQMIIISLKEEFYSRADALIGVYP
EHDECMFSHVLTLDLSKYPDTEDQEGSRSHRKPRARVSQSPQSPQSR
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggggcaccttgagttgctgctcgtggagaatttcaagtcgtggcgaggccgccaggtc
atcggccctttcaagaggttcacctgtatcatcggccccaacggctcgggaaagtctaat
gtaatggatgcacttagttttgtaatgggagaaaaaacaactaatttaagagtaaaaaac
attcaagaacttattcatggagcacacattggaaaacctgtttcttcttctgcaagtgtg
accattatatacgtagaagacagtggagaagagaaaacattcacaaggattatccgaggg
gggtgctcagaatttcattttggggataaacctgtgagtcgttctgtgtatgtagcccag
ttggaaaacataggcataatagtcaaagcacagaactgtctagtttttcagggaactgta
gagtcaatatccatgaaaaaacccaaagagagaacccaattttttgaagaaatcagtact
tcaggagagtttataggagaatatgaggcaaagaaaaagaagttacaaaaagccgaagaa
gatgcacaatttcattttaacaggaaaaaaaatgtagctgcagaacggaagcatgcaaaa
atagagaaagaagaggcagaacattatcaaagtctccttgaagaattgaaaacaaacaag
atacaactgatgcttttccaactatattataatgaggaaaaaatcaatgttttaaacact
gaattagagcatatggacaggaatttaagtgttgtaaaagacactctttctcaccatgaa
aacataattaaagctaagaaaaaggattatggaatgttaactagacaactacagcaaaca
gcaaaagaactgaaatctgtcgaagcagttttaaatcagaagaggcctcagtacattaaa
gctaaagaaaacacttctcaccatctaaaaaaattggatttgtctaagaaattgataaca
gacaatgaaaaacaatgtgctaagcaggaagatggcattcgagccttagtggcagaactg
gttgatttagatagagcatggagaagttttgaaaagcagatggaagagaaaatcttacac
aaaggaagagacattgaattggaaaatagtcagctggaccgttataaagagcttaaggaa
caagtcagacggagggtaggtataatgacacaacaactggaaaaactacagtgggaacag
aaggcagaaaaagaaagactggcatttgaaaggaggaggcatggagacactcagggaaat
ctaaaacaaataaaagaacaaatagaagagcataaaaaacgaatagagaaattggaggaa
tatacaaagacgtgcatggattgcttggaagataaaaaacagcaagaagaagccctgata
aaagaaattgacaatacaaaatcaagaatgtctgaagttaatgaagaattgagtcttatt
agaaatgaattgcagaatgctggaattgataaccatgaaggaaaacgtcagcggaaaaga
gcagaagttctcgaacaccttaaaagactttacccagattctgtgtttggaagacttctt
gatctatgtcatcctattcataagaaataccagctggctgtgactaagctttttggccgg
tacatggttgccattgttgttgcctcagaaaaggtagcaaaagattgtattcggtttctg
aaggaggaaagagctgaacctgagacattccttgctctagattaccttgatatcaagcca
atcaatgaacgactaagggaaattaaaggctgtaagatgatgatcgatgttataaagacc
cagtttcctcagctgaagaaagtgattcagtttgtttgtggaaatggccttgtctgtgag
actgtggaagaggcaagacatattgcatttggtggacctgaaagacgaaaggcagtagca
cttgatggaacactgtttttgaaatctggagtgatctcaggagggtcaagtgacttaaag
cacaaagctctgtgttgggatgagaaggagttacacagtctaagagataaaagaaaccaa
cttgtccaagagctaaaggagttaatgaagacgctccgcaaggaaacagatctgaaacaa
atacaggcattagtacaaggaaccaatacacgactcaaatattcacaaaatgaactagag
atgattaaaaagaagcaccttgctacattttaccgggaacaatctcagctacaaagtgaa
ttactgaatattgattctcagtgtacaatgttgagcgaaggaatcaacaaacagcaacaa
aagattgaagaatttcaagataagatagacaaggtagaagatgacatattccaagacttc
tgtgaagaaattggtgtggaaaatatccgtgaatttgagaacaaacatgttaaacagcag
caagaaaatgatcaaaaaagattagagtttgaaaaacaaaaaactcggctcaatattcag
cttgaatatagtcgaaatcaacttaagaagaaactgaataagatcgacacattaaaaaca
acaatccagaagggcagagaagacattgataacctaaagaagaccgaagaagagtgtctg
aaaattgttgaagaactcatggtgaaacaagaacaagttaaggaagtgcttgccacacag
agttccaacattgagaaaattcatattcaaattgaagaggaacgcaagaagtttttggct
gttgatagggaagttggaaaattacagaaggaagttgtaatcattcagggttctttggaa
cagaaacaactagagaagcataacttgctcctggactgcaaagttcaagacattgacata
agtctcatgctggggtcattggaggacatcattgaagtggagctaactgaaacagaaagt
acccaggcaacggctgatatctatgaaaaagaagcatccatccaaatagactacagccct
ctaagggaggattggaaggctctacaatcagataaggaggtggaggcccacctcacactc
cttctacagcaagtagcatcccaagaaaatactctactgaagactgcagctccaaacctg
cgagcacaggagaacttaaaggctgtcagagacaaatttcaagaatctgcagatgctttt
gaggccagcagaaaggaagccagaatatgtaggcaagagtttgaacaggtgaaaagacgg
aggtacgatgctttcagtcagtgttttgagcacatctcggtctcaattgatcaaatctac
aagaagctctgcaggaacaacagtgcccaggcatttcttagcccagagaaccctgaagaa
ccttacttagatggaattagctataattgtgtggctccaggcaaacggttcatgcctatg
gacaacttgtcagggggagaaaagtgtgtggctgctctggctcttctgtttgctgtacac
agttttcgacctgctccattctttgtattagatgaagtagatgcagccctggacaatact
aacatcggcaaagtctcaggttacatcaaagagcagagtcaggaacaatttcagatgata
atcatttccctgaaagaggagttttactccagagctgatgcactgataggcgtctaccca
gagcacgatgaatgcatgttcagccatgtgttgactctggacctttccaagtatccagac
actgaagaccaagaaggcagcaggagccaccggaaacccagagcacgagtatcacagtcc
ccgcagtctccccagtctcgttag
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