Rattus norvegicus (rat): 301020
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Entry
301020 CDS
T01003
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03082
ATP-dependent chromatin remodeling
rno04714
Thermogenesis
rno05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
301020 (Smarcc1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
301020 (Smarcc1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
301020 (Smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
301020 (Smarcc1)
03036 Chromosome and associated proteins [BR:
rno03036
]
301020 (Smarcc1)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
301020 (Smarcc1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
301020 (Smarcc1)
PBAF complex
301020 (Smarcc1)
GBAF(ncBAF) complex
301020 (Smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
DUF919
Chromo
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
301020
NCBI-ProteinID:
NP_001400502
RGD:
1304850
Ensembl:
ENSRNOG00000020804
UniProt:
A0A8I6AMA8
A6I3D4
LinkDB
All DBs
Position
8:118986917..119093161
Genome browser
AA seq
1102 aa
AA seq
DB search
MATTAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRRDKQVLVHWGFYPDSYD
TWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRERKASANARKRKHSPSPPPPTATESRKKSGKKGQASLYGKRRNQKDE
DEQEDLTKDMEDPTPVPNIEEVLLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSADAGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDPDGQQPEKAENKGENESDEGDKIQDGENEKNSEKERDSDTSEDVKPEEKENEENKEL
TDTCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QHGQPPQQAHQHPGGPGLAPLGAAGHPGMMPHQQPPPYPMMHHQMPPPHPPQPGQIPGPG
SMMPGQPMPGRMIPTVAANIHPTGSGPTPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQP
PPPPADGVPPPPVPGPPASATP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggccacgacagcgggtggtggtccgggagcagcagcaggcgccgtgggtgcagggggt
gcggcggcggcctccgggttggccgtgtaccggaggaaggacgggggcccggccagcaag
ttttgggagagcccggacacggtgtcccagctagattcggtgcgagtctggctgggcaag
cactacaagaagtatgttcatgcggatgcgcctaccaataaaacactggctggactggtg
gtgcagcttctgcagttccaagaagatgcctttgggaagcatgtcaccaacccagctttc
accaaactacctgcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcacatt
cttggggctgcttacaagtacaaaaatgaacagggctggcgcagatttgacctgcagaac
ccatcgcgaatggaccgtaatgttgagatgttcatgaacatcgagaaaacattggtacag
aacaactgtctgactagacctaacatctacctcattccagacattgatttgaagttggct
aacaagttgaaggatatcatcaaacggcatcaggggacgtttactgatgagaagtcaaaa
gcttcccaccatatttacccatacccttcctctcaagaggacgaggagtggctgaggcca
gtgatgaggagagacaagcaggtgctggtgcactggggcttctaccctgacagctatgac
acatgggtccatagtaatgatgttgatgctgaaattgaagatgcaccaatcccagaaaag
ccatggaaggttcatgtgaaatggattttggacactgatgttttcaatgaatggatgaat
gaagaggattatgaagtggatgagaacagaaagccagtgagttttcgtcaacgaatttca
acaaagaatgaagagccagtcagaagtccagaaaggagagagaggaaagcatccgccaat
gctcgcaagaggaagcattccccttctcctcctcctcctacagccacggagtctcggaag
aagagtgggaagaaaggacaagctagtctctatgggaagcgtcgaaatcagaaggacgag
gatgagcaggaagatcttaccaaggacatggaagacccaacccctgtccccaacatagag
gaagtgcttctcccgaagaacgtaaacccaaagaaggacagtgaaaacacaccagttaaa
ggaggcacggtggcagatctagatgagcaggatgaagaagccgttacaacaggaggaaag
gaagatgaagatcccagcaaaggtgatccaagtcgttcagctgacgcaggtgaagacaat
gtgacagaacagaccaatcacatcattattcccagctacgcttcctggtttgattataat
tgtattcatgtgattgaacggcgtgcgcttcccgagttttttaatggaaaaaacaaatcc
aagactcctgaaatatacttggcatatcgaaattttatgattgatacataccgtctaaat
cctcaagaatatttaaccagcactgcttgtcggcgaaacctgactggagatgtgtgtgct
gtgatgagggttcatgccttcttagagcagtggggtcttgttaactaccaagttgatcca
gaaagtcgacccatggcaatgggacctcctcccactcctcatttcaatgtgttagctgac
acaccctctgggctcgtgcctctgcatcttcgatcacctcaggtccctgctgctcaacag
atgttaaattttcctgagaagaacaaggagaaaccaattgatttgcagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagtaaaggagctagtgccggaagg
gagtggacagaacaggagacccttcttctcctagaggctctggagatgtacaaggatgat
tggaataaagtctcggaacatgttggaagccgtactcaggatgaatgcatcctccacttt
ttgaggcttcccattgaggacccataccttgaaaattcagatgcttctcttgggccacta
gcttaccagcctgtccctttcagccagtcaggaaaccccgtgatgagtactgttgccttt
ttagcatccgtggttgaccctcgagtagcatcagctgcagccaaagcagctttggaggag
ttttctcgtgtccgagaagaagtacccctggaattggtggaagcgcatgtcaagaaagta
caggaagctgcaagagcctctgggaaggtggatcctacctacggcctggagagcagctgc
attgcaggcaccgggcccgatgagccggagaagcttgaagggtctgaagaagagaagatg
gaaacagatcctgatggtcagcagcctgaaaaggcagaaaacaaaggggaaaatgaatcg
gatgaaggggataaaatacaagatggagagaatgagaaaaacagcgagaaggaacgagat
agtgacaccagtgaggacgtcaagccagaagaaaaggagaatgaagagaacaaagagctc
actgatacatgtaaagaaagagaaagcgataccgggaagaagaaagtggagcacgagatt
tctgaaggaaatgttgccacagccgcagcagctgctctggcctcagctgctaccaaagcc
aagcacctggctgctgtcgaagaaagaaagatcaaatccctggtggctctcctggttgag
acacagatgaagaagctagagatcaaacttcgacattttgaagagctggagactattatg
gacagagagaaagaggctctagaacaacagagacagcagttgcttactgaacgtcagaac
ttccacatggagcaattgaaatatgctgaactgcgtgctcggcagcagatggagcagcag
cagcacggccagccacctcagcaagcacaccagcacccgggaggaccggggctggcccca
cttggggcagcaggccacccaggcatgatgcctcatcagcagccccctccataccccatg
atgcaccatcagatgccaccaccccatcctccccaaccaggtcaaataccaggccctggc
tccatgatgcctgggcaacctatgccaggtcgcatgattcccaccgtggcagccaacatt
caccctactgggagtggccctacccctcccggtatgcctccaatgcccggaaacatctta
ggaccccgggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcagccg
ccgccgcctcctgcagatggggtccctccacctcctgttccaggccctccagcctcagcc
actccctag
DBGET
integrated database retrieval system
