KEGG   Rattus norvegicus (rat): 301106
Entry
301106            CDS       T01003                                 
Symbol
Trim42
Name
(RefSeq) tripartite motif-containing protein 42
  KO
K12018  tripartite motif-containing protein 42
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    301106 (Trim42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    301106 (Trim42)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     301106 (Trim42)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    301106 (Trim42)
SSDB
Motif
Pfam: zf-B_box fn3 Pur_ac_phosph_N Ig_DSCAM-DSCAML_C CHDCT2 DUF386
Other DBs
NCBI-GeneID: 301106
NCBI-ProteinID: NP_001013977
RGD: 1359699
Ensembl: ENSRNOG00000048975
UniProt: Q5PQK3
LinkDB
Position
8:complement(106781847..106802764)
AA seq 723 aa
MDTAMCVCSPCCTWQRCCPRLFSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCAEN
PNCHWCCCSWANDPNCKCCCTASTNLKCYYYESRCCRNVTVTFRKGRLRSIRTSSKTALR
VGSSDTQLDEPKTMPASSHLVNHLTCPMCNRLRLHSFMLPCNHSLCEKCLRQLQKHAEVT
ENFFILICPMCNRSHCMPYSHQMHLPENYLRGRLTKRYMQQHGYLKWRFDRSSGPILCQV
CRTRRIAYKRCVTCRLNLCNDCLKAFHSDVAMQDHVFVDTSAEDQDEKICIHHPSSRINE
YCRSDNQLLCAFCKIAFHNGHDTVSLIDACSERSAALFSAIAKFKAVRYEIDNDLMEFNI
LKSSFKADKEAKRKEVRNGFLKLRAILQEKEKIIMEQIENLEVSRQKEIEKYVYITTMKV
NEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEEGIQNTFRPDPQLRLHSLHCIPLDFA
ELSSAIHELFPTGPKKTCSSGDSLPSQYPVHSEMMIARKVTFSTHSFGNQQIYQRSSSLI
SFNTANDKGKAGLENYGRAQSAAPAKTTDGLYTYWSATGETQPPQSSNSFHNWYSFNDTS
VRTPGPIVIYQTLVYPRAAKVYWTCPTEDVDSFEMEFYELITTPPNNVRTELCGQIRDIM
QQNLELHNLTPNTEYLFKVRAINENGPGQWSDICKVVTPDGRGKNRAKWGLLKNIQSALQ
KRF
NT seq 2172 nt   +upstreamnt  +downstreamnt
atggacacagctatgtgtgtctgttctccatgctgcacctggcagagatgctgcccccgg
ctgttctcctgtttatgctgcaagttcatcttcacctcggagcggaactgcacctgcttc
ccctgcccctacaaggatgaacggaactgccagttctgccactgcacctgcgcggagaac
cccaattgccattggtgctgctgctcctgggccaatgaccccaactgtaagtgctgctgc
acagccagcaccaatctgaagtgctactactatgagagccgctgctgccgcaatgtcacc
gtcacatttagaaagggtcgccttcgaagcatccgcacctcctcaaagaccgccctccgc
gtggggagcagcgacactcagcttgatgagcccaagaccatgcctgccagcagccacctg
gtgaaccacctcacctgccccatgtgcaaccggctgcgcctgcactccttcatgctgccc
tgcaaccacagcctgtgcgagaagtgcctgaggcaactgcaaaaacacgctgaggtcact
gagaatttcttcatcctcatctgccccatgtgtaaccgctcgcactgcatgccctacagc
caccagatgcacctgccagaaaactacctgcgcgggcgcctcaccaaacgctacatgcag
cagcatggctacctcaagtggcgcttcgaccggtcctcgggacccatcctctgccaagtg
tgccgcacccggcgcattgcctacaagcgttgtgttacctgtcgcctcaacctgtgcaat
gactgtctcaaggccttccactcggatgtggccatgcaggatcacgtcttcgtggacacc
agcgccgaggatcaggatgagaagatttgcatccaccatccatccagccgcatcaacgag
tactgtcgcagcgacaaccagctactctgcgccttctgcaagatcgctttccacaatggc
catgacacggtcagcctcatagacgcctgctccgagaggtctgcagccctcttcagcgcc
atcgccaagttcaaagcagtccgatatgagattgacaatgacctgatggaattcaacatt
ctgaagagtagcttcaaagctgacaaggaagcaaagcggaaggaggtccggaatggattc
ctcaaactgcgagccatccttcaagagaaagagaagatcatcatggaacagatcgagaac
ctagaagtgtccaggcagaaagaaattgagaaatatgtatacatcacaaccatgaaagtg
aacgaaatggatggtctgattgcctattccaaggaagccctgaaggaaacaggccaggtg
gcgttcctgcagtctgccaagatcctggtggaccagattgaggagggcatccagaatacc
ttcaggcctgaccctcagctgcggcttcactccctacactgtattcccttggactttgca
gaactctccagtgccatccacgagctttttcccacaggacccaaaaagacttgctcttca
ggggactcactcccttcccagtatcctgtccactcggaaatgatgatcgccaggaaggtc
acattcagcacccacagcttcggcaaccagcagatataccagcggagctcttccttgata
tccttcaacaccgccaacgacaagggcaaggcgggtctagagaactatgggagagcccag
tctgccgcacctgccaaaacaactgatggcctttatacttactggagtgccacaggggaa
acccagcctccgcagagtagcaacagcttccacaactggtattctttcaacgacacctct
gtgaggaccccaggcccaattgtcatctaccagactctggtatacccaagagcggccaag
gtttactggacgtgcccaacagaagatgtggactcttttgagatggaattctatgagctc
atcaccacccctcctaataatgttcgcacagagctctgtggacaaattcgagacatcatg
cagcagaacctggagctgcacaacctgacccccaacaccgagtatttgtttaaggttaga
gccatcaatgaaaatggtcccgggcagtggagtgacatctgcaaggtggtaacaccagat
gggcgtgggaagaaccgagctaagtggggactgctgaagaatatccagtctgccctccag
aagcgcttctga

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