Rattus norvegicus (rat): 301373
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Entry
301373 CDS
T01003
Symbol
Tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
301373 (Tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
301373 (Tgfbrap1)
Membrane trafficking [BR:
rno04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
301373 (Tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
CNH
Clathrin
TPR_Vps41
Cmr2_Zn-bd
Motif
Other DBs
NCBI-GeneID:
301373
NCBI-ProteinID:
NP_001100377
RGD:
1310772
Ensembl:
ENSRNOG00000024562
UniProt:
D3ZXT8
A6INR0
LinkDB
All DBs
Position
9:complement(52813087..52863441)
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AA seq
902 aa
AA seq
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MSGNVVPSPCSTTCLCGFLDPPFKLRLQTLHLQKVVTDYAVDMMNIKAFTLVSAVERELL
MGDRDHISIECVECCGRNLYVGTNDCFIYHFLLEEKAMPTGTATFIATKQLHRHLGFKKP
VNELCAASALNRLLVLCDNSITLVNMLNLEPVPSGARIKGATTFAVNENPVNGDPFCVEV
CIISVKRRTVQMFLVYEDRVQIVKEVSTTEQPLAVAVDGYFLCLALTTQYIILNYSTGFS
QDLFPYCSEEKPPIVKRIGRQEFLLAGPGGLGMFATVAGISQRAPVHWSENVIGAAVCFP
YVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQ
DLLANRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSSQL
DVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEIRST
EVANGYKEDIDTALLKLYAEADHDSLLDLLVTENSCLLTDSAAWLEKHKKYFALGLLYHY
NKQDASAVQLWVNIVNGDIQDSTRSDLYEYIVDFLTYCLDQELVWTHADWLLQKSQEVGV
QVFTKRPLDEQQQTSFNPDDIISCLKKYPKALVKYLEHLVIDRRLQKEEYHTHLALLYLE
EVLRQRAPTGGKDVEATETQAKLRRLLQKSDLYRVHLLKEKIQGAGLPMESAILHGKLGE
HEKALHILVHEMGDFSAAEDYCLWSSEGQDAACRQRLFHTLLAMYLRAGPSAHDLTVAAV
DLLNHHAREFDATQVLQLLPDTWSVQLLCPFLTGAMRDSIHARRTTQVALGLAKSENLIY
MYDKMKLKGSAIWLSEKKLCQLCQNPFGEPVFVRYPNGGLVHTHCAASRHTNPSSPSPGT
RT
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaatgtggtccccagtccctgttctactacttgtctctgtggatttctggac
ccaccattcaaactgagacttcagactcttcatctgcaaaaagttgtgacagattacgca
gtagacatgatgaacatcaaggccttcaccttggtctctgcagtggaacgggagctgctg
atgggtgacagagaccacatcagcattgagtgtgtggagtgctgtggcaggaatctctat
gttggcaccaacgactgcttcatttaccacttcctgctggaggagaaggccatgcctaca
gggacagctacattcattgccaccaaacagctacatagacacctgggcttcaagaaacct
gtgaacgagctgtgtgcagcctcagctcttaataggctgctggtgctctgtgacaactct
ataaccctggttaacatgctgaacctggagccagtcccctcaggagcccgcatcaaaggg
gctacaacatttgcagtgaacgagaaccctgtgaatggggaccctttctgtgtggaggtg
tgcatcatctctgtgaagcgtaggaccgtccaaatgtttctggtgtacgaggaccgagta
cagattgtcaaggaggtgtccaccacagagcagcctcttgctgtggctgtggatggctac
ttcttgtgcctggccttgaccacacaatacatcatcctgaactacagcacaggcttttcc
caggacctgtttccctactgcagtgaggagaagccacccatcgtcaagaggataggcaga
caggagttcttgctggctggcccaggaggcttgggcatgtttgccaccgtggccgggatc
tcccagcgtgcccctgtgcactggtcagaaaatgtaatcggggcagctgtttgcttcccc
tatgtcatagcgcttgatgacgaattcatcacagttcacagcatgctggatcagcagcag
aaacagaccctgccttttaaggagggtcacatcctgcaggactttgaaggaagagtgatt
gttgccacaagtaaaggagtttacatcttggttccattacctctggaaaaacaaatacag
gatctattagcaaaccggagagtggaagaggctttagtcttggcaaaaggagcccgaagg
aacattccaaaagagaagtttcaggtaatgtacaggaggattctgcagcaggcaggcttt
atacagtttgcgcaactccagttcctggaagcaaaagagctcttcagaagcagccagctg
gatgttcgggagctgatctctctctaccccttcctgttgcccacctcctcctccttcacc
cggtctcaccctcctcttcatgagtacgcagacctgaaccaactgacccaaggtgaccag
gagaagatggccaagtgcaagcgcttcctcatgagctacctaaatgaaatccgcagcaca
gaggtagcaaatggctacaaggaagacatcgacacggccttgctcaagctgtatgcagag
gctgaccatgacagcctactggacctcttggtcactgagaactcctgcttgctgaccgac
agtgctgcctggctggagaagcacaaaaagtactttgcactggggctgctctatcattac
aataaacaagacgcctctgcagttcagttgtgggtgaacattgtgaatggggacatccag
gactccacacgctcagacctgtatgaatacatcgttgattttcttacctactgcctagac
caagagctggtgtggacccatgctgactggctgttgcagaaaagccaggaggttggagtt
caggttttcaccaagagacctttggacgagcagcagcaaactagttttaatccagacgac
attattagttgccttaagaaataccctaaagccctggttaagtatctggaacatctcgtt
atcgacaggagattgcagaaagaagagtaccacacccaccttgccctcctctacctggag
gaagtgcttcggcagagggcacccactggaggcaaggatgtagaagccaccgagacacag
gccaaactccgcaggctgctccagaagtctgacttgtaccgtgtccacttgttgaaagag
aaaatccagggtgctggcctgcccatggaaagcgccatcctccacgggaagctgggtgag
catgagaaggccctgcacatcctggtgcacgagatgggggacttctctgcagctgaggac
tactgcctatggagctccgagggtcaggatgcagcctgccgtcagcgcctcttccacacg
ctgcttgccatgtacctccgtgcaggcccctctgctcatgacctgaccgtggctgctgtg
gacttgctgaaccatcatgccagggaatttgatgccacccaggttctacagctgctgcct
gacacctggtcggtgcagcttctctgccccttcctcacaggggctatgagggacagcatc
cacgccaggaggaccacacaggtggctcttggcctggccaaatcagaaaacctgatttac
atgtatgataagatgaagctgaagggaagtgccatctggctctcagaaaaaaagctttgc
cagctctgccagaacccttttggtgaacctgtgtttgtcagatacccaaatggagggctt
gtgcacacccactgtgccgccagcagacacacaaaccccagctcgcccagccctggcact
cggacttga
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