KEGG   Rattus norvegicus (rat): 302405
Entry
302405            CDS       T01003                                 
Symbol
Pabpc1l2a
Name
(RefSeq) polyadenylate-binding protein 1-like 2
  KO
K13126  polyadenylate-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    302405 (Pabpc1l2a)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    302405 (Pabpc1l2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    302405 (Pabpc1l2a)
   03041 Spliceosome [BR:rno03041]
    302405 (Pabpc1l2a)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     302405 (Pabpc1l2a)
   mRNA cycle factors
    Stress granule specific factors
     302405 (Pabpc1l2a)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   Complex C specific factors
    302405 (Pabpc1l2a)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_Nup35 RRM_MUD2_C RRM_7 RBD_RDR6
Other DBs
NCBI-GeneID: 302405
NCBI-ProteinID: NP_001388053
RGD: 1566367
UniProt: A0ABK0LJK2
LinkDB
Position
X:72063772..72066435
AA seq 229 aa
MDEELAAALAAEEEEAAAGGSDDGNPDFPTASLYVGDLHPEVTESMLYEKFSPAGPILSI
RLCRDKVTRRSLGYAYVNYQQPVDAKRALETMNFDVINGRPVRIMWSQRDPSLRKSGVGN
VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG
MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADFKDFDDDSDDEATFR
NT seq 690 nt   +upstreamnt  +downstreamnt
atggacgaagagctggcggcggccttggctgcagaagaggaggaggcggcggccgggggc
tcggacgatgggaacccagactttcccacggcctcgctgtacgtgggcgacctgcacccc
gaggtgaccgagtccatgctgtatgagaagttcagccccgccgggcccatcctgtccatc
cgcctgtgccgggacaaggtcacccggcgctctctgggctacgcatatgtcaactaccag
caaccggtggacgccaagcgggccctggagaccatgaactttgacgttataaatggcagg
ccagtgcgcatcatgtggtcccagagggacccgtcgctccgcaagagcggggtgggcaac
gtcttcatcaagaacctgggcaagaccatcgacaacaaggcgctgtacaacatcttctcg
gcctttggcaacatcctgtcctgcaaggtggcctgtgacgaaaaggggcccaagggctac
gggttcgtgcacttccagaagcaggagtcggccgagcgggccatagatgcgctgaatggc
atgttcctgaactaccgcaagattttcgtggggagattcaagtcccacaaggagagggag
gccgaaaggggagcctgggcccgccagtccaccagcgctgacttcaaggatttcgacgac
gactcggatgacgaggccaccttccgatga

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