Rattus norvegicus (rat): 303369
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Entry
303369 CDS
T01003
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform 1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
303369 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rno03400
]
303369 (Lig3)
Enzymes [BR:
rno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
303369 (Lig3)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
303369 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
303369
NCBI-ProteinID:
NP_001380964
RGD:
1309875
Ensembl:
ENSRNOG00000021815
Vega:
OTTRNOG00000000454
LinkDB
All DBs
Position
10:68215371..68238705
Genome browser
AA seq
1002 aa
AA seq
DB search
MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSF
QRGHLRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKTAATPKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQ
DPSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDG
FRGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADF
AVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSRGGEK
LAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLYLPPSTPDFRRLKRYFVAFNGDLV
QEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgactttggcctttaagaccctcttcccgagaaacctctgtgcccttggcagaaaagaa
ctgtgcctgttttcagaacagcatcactggcctgccataagacagttcagccagtggtcg
gaaacaaatctcctttgtgggtgctgcctcctccagagaagaaagcctgtcctatctttc
cagagaggtcatctaagaccacgtgccacccaccttatttcgtggtcagggtcgcatgtg
ggactctgtactggcccctgtgagatggccgaacagcggttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaagggcgtatgccgcatt
ggcaaagtggtacccaatcccttctcagagtctgggggtgatatgaaagagtggtaccac
attaagtgcatgtttgagaaactggagcgggcgcgggccaccacaaaaaaaattgaagac
ctcacagagctggaaggctgggaagagctggaagataatgaaaaggaacagataagccag
cacattgcagacctgtcttccaagacagctgccacaccgaagaagaaagctactgtccag
gctaagctgacaaccactggccaagtgacatcaccagtgaaaggcgcttcgtttattacc
agtaccaatccccggaaattttctggcttttcagcagccaaaccgaacaactctgagcaa
gacccctcaagccctgctcctaagaccagtctgtccgcaagtaaatgtgaccctaagcac
aaagattgtctactacgagaattccggaagctgtgtgccatggtagctgaaaatcctagc
tataacaccaagacccagatcatccacgacttcttgcagaaaggctccacaggagatggc
ttccgaggcgatgtgtacctgacagtgaagctgctgctgcctggtgtcatcaagagtgtg
tacaacttgaatgataagcagatagtgaaactgttcagccgaatttttaactgcaaccca
gatgatatggcccgggacctagaacagggtgacgtgtccgagacgatcagagtcttcttt
gagcagagcaagtcttttcccccagctgccaaaagcctcctcaccatccaggaggtggat
gcatttcttctgcacctctccaagctcaccaaagaggatgagcagcagcaggccctgcag
gacattgcttccaggtgtacagccaatgaccttaagtgcattatccggctgatcaaacac
gatctgaagatgaactcgggtgcaaaacacgtgttagatgcccttgaccccaatgcttat
gaagccttcaaagcatcacgcaacctgcaggatgtggtggagcgggtccttcacaatgag
caggaggtggagaaggacccaggccggcgtcgggctctgagtgtccaggcctcattgatg
acacctgtgcaacccatgctggctgaggcctgcaagtccattgagtatgcaatgaagaag
tgtcccaatggcatgttctctgagatcaagtacgatggtgagcgagtccaggtgcataag
aagggagaccatttcagctacttcagccgcagtctcaagcctgtcttgcctcacaaggtg
gcccactttaaggactatattcccaaagcgtttcctgggggtcaaagcatgatcttggac
tctgaagtgctcctgattgataacaacacaggcaaaccactgccctttgggaccctggga
gtacacaagaaagctgctttccaggatgctaatgtctgcctgtttgtttttgattgtatc
tactttaatgatgtcagcttgatggacaggcctctctgtgagcgacggaagtttcttcat
gataacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaa
gcttcagacctggctgacatgataaaccgggtgatccgagagggcctggaaggtttggtg
ctaaaggatgtgaagggtacatatgagcctggaaaacgacactggctgaaagttaagaaa
gactatttgaacgagggggccatggctgatacagctgatctggtggttcttggggccttc
tatgggcaagggagcaaaggtggaatgatgtccatcttcctcatgggctgctatgacccc
gacagccagaagtggtgcactgttacaaaatgtgctggaggccatgacgatgccacactt
gcccgcctgcagaaagagctagatatggtgaagattagcaaggatcctagcaagataccc
agctggctgaagatcaacaagatctactatcctgactttatcgtcccagacccaaagaaa
gctgctgtgtgggagatcacaggagcagaattctctcgatctgaggcgcatactgctgat
gggatctccatccgatttcctcgatgcacccgaatccgggatgacaaggactggaaatct
gccactaacctcccccaactcaaggaactgtaccagctgtccaaagacaaggcagacttc
gctgtggtggctggagatgaggggagctccactactggaggcagcaatggtgagaatgag
ggcactgctgggtctactgtgccccgcaagggccccaagggaccccccagtaagtcctct
gccagtgccaagaagactgaacagaagctgaatgatcccagtagcagaggtggagagaag
ctggctgtgaagtcttctcctgtcaaagtggggatgaagaggaaagctgctgatgagacc
ccaggcctgacaaaggcgctgttggatgtcttcactggggtgaggctctacttgccacct
tctacaccagacttcagacggctcaaacgttactttgtggcattcaacggggacctggta
caggaatttgacatggcctcagccacacatgtgctgggtaacagggacaagaacactgat
gcccagttggtctcttcagagtggatttgggcatgcatccggaaacggaggctggtagct
ccctgctag
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