Rattus norvegicus (rat): 303607
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Entry
303607 CDS
T01003
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
303607 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
303607 (Ddx42)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
303607 (Ddx42)
Spliceosome [BR:
rno03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
303607 (Ddx42)
Complex B
303607 (Ddx42)
Complex C
U2 SnRNP specific factors
303607 (Ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
303607
NCBI-ProteinID:
NP_001100529
RGD:
1304909
Ensembl:
ENSRNOG00000009474
UniProt:
D4A031
A6HK14
LinkDB
All DBs
Position
10:91648719..91680730
Genome browser
AA seq
929 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGAASSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFRSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGTSTAGASGWTSAGSLNSVPTNSAQQGHNSPDNPITSSTKNIPGFNNSGNISSAPVTY
PSIGAQGVNNTASGSNSREGIGGGNGKRERYTENRGGGRHSHGDSGNRHGDGGRHGDGYR
YPESSSRHTDGHRHGETRHGGSASRHGESRGANDGRNGESRKEGFNRENRMDPKVDSSRM
DKVDSKTDKTPDGFAVPEPPKRKKSRWDS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggaaccaagcgggggtttggctttggaggttttgcc
atcagtgctgggaagaaggaggaagccaagctgccgcagcagtcgcacagtgccttcggg
gcggccagctcttcttctggatttggaaagtctgctccaccacagcttccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcttatttcgaggatgaagaa
gaagactccagcaatgtagacttaccttacattcctgctgaaaactcgcctacccgccag
cagttccgatccaagccagcagactctgacagtgacgacgaccccttagaggcattcatg
gctgaagtagaggatcaggcggctagagacatgaagagacttgaggaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgatacatggcagaaaacccaactgctggggtagttcaggaggaagaggaagacaat
ctggagtatgatagtgatggaaatccaattgcaccttctaaaaagattatcgatcccctt
cctcccattgatcattcggagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcactccacagcagctaatagacctgcggcataaactcaac
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcatcagattaggaaatctgagtacacacagccaactccaatacag
tgtcagggtgtgcccgtagcactaagtggtagagacatgatcggtattgctaaaacaggc
agtgggaaaaccgcagcctttatttggcccatgttgattcacataatggatcagaaggag
ttggaaccaggtgatggaccaattgcagtgattgtgtgtcctactagggagctttgtcaa
cagatccacgccgagtgcaagcgttttgggaaagcatataatcttcgatcagtggcagta
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccgggtcggctgattgatcatgtgaagaaaaaagctaccaatcttcaaaga
gtctcttaccttgtgtttgatgaagctgatcgaatgttcgacatggggtttgagtatcag
gttcggtccatagcaagtcatgtccgtcctgacagacaaactctcttattcagtgcaact
tttcggaaaaagattgaaaaattggccagagacatcttgattgatcctatccgagtggta
caaggagacatcggagaggcaaatgaagacgtaacacagattgtggagattctccattct
ggacctagtaaatggaactggctcactcggcgtctggtagagtttacttcttccgggagt
gtcctcttgtttgttaccaagaaagccaacgctgaagaactggccaataaccttaagcag
gagggtcataatcttggtctgctccatggggacatggatcagagtgaaagaaacaaggtc
attttagattttaagaaaaaagacatccccgtcctggtggccactgacgttgcagcccgt
ggtctggatattccttcaattaagacagtcattaactatgatgttgcacgagacattgat
acccatactcataggattggccgaacaggaagagctggtgagaagggtgtagcctatacc
ttactgaccccaaaggacagcaattttgctggtgaccttgtacggaacctggaaggagcc
aaccaacatgtttctaaggaactcttagatctcgcaatgcagaacgcctggtttcggaag
tcacgcttcaaaggagggaaaggcaaaaagctgaacatcggtggaggaggcttgggctat
agagagcggcctgggctgggctctgagaattcggaccgaggaagtaacaacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagataggctgacagcaatg
aaagcagctttccagtcccagtataagagtcactttgttgcagccagtttaagtaatcag
aaggccggaacctctactgctggggcaagtggatggactagtgcaggaagcttaaattct
gttccaactaattcagcacagcagggccataatagtcctgacaatcccatcaccagttct
accaagaacatcccaggcttcaacaattctgggaatatcagtagtgccccagtgacctac
ccttctattggagcccaaggagtcaacaacacagcttcagggagtaacagccgtgaaggg
attgggggtggcaatgggaaaagagagagatatactgagaaccggggtggtggccgtcat
agccatggagacagtggcaatcgacatggagatggtggccgccatggagatggataccgt
tacccagaaagcagtagccgtcatacggatggccaccgacatggagagaccaggcacgga
ggaagtgcaagcagacatggagaaagccggggtgcaaatgatggcaggaatggagaaagc
aggaaagaaggctttaatcgtgaaaacaggatggaccccaaggtggacagcagcaggatg
gacaaagtggacagcaagacagataagacacctgatggctttgctgttccagagccaccc
aaacgcaagaaaagccgatgggatagttag
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