Rattus norvegicus (rat): 303774
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Entry
303774 CDS
T01003
Symbol
Tnrc6c
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X4
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
303774 (Tnrc6c)
03036 Chromosome and associated proteins [BR:
rno03036
]
303774 (Tnrc6c)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
303774 (Tnrc6c)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Gene silencing
piRNA pathway
303774 (Tnrc6c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
303774
NCBI-ProteinID:
XP_017453243
RGD:
1310027
Ensembl:
ENSRNOG00000022395
UniProt:
D3ZRA6
LinkDB
All DBs
Position
10:103367498..103478246
Genome browser
AA seq
1901 aa
AA seq
DB search
MEEKKKKKQEDKKKKEGAQKKAADQKTKVPELTKTCSSQPQPAGTSPSTSTSTISSGSNG
KRASACGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGSLTSVSPAQAAGPAGASP
PPLPGAGAQQHPSKLQPDLGHSGLAGHYENCHWGQHPSYRSEADCSWDKVIIDRTDQELW
PSTPVTETESASECPTDTDSASNCGSENSSMATGSTQSSFPGHPKKTNGSHGTNGTLVQS
PSNPSALGAGAANGNGGMARVWGVATGSSSGLAHCSVGGGDGKMDNMIGDGRSQNCWGAS
NSNAGINLSLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQSMGSQNGNPVGTLGA
WGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPLNNSSPNPINAMQTNGLPNWG
MAVGMGAIIPPHLQGLPGANGSSVSQGSGSGGEGMGSSVWGLSPGNPATGSTNCGFSQGN
GGDTVNSALSAKQNGSSSAAQKEGNGGNAWDSGPPAGPGILAWGRGNGNGIGNIHSGAWG
HPSRSSSNGVNGEWAKPPNQHSSSDINGKGSTGWDSASAASQTPALQPGSEHMNSWAKAT
SSGTTASEGSSEGSGSHNEGSTGREGAGEGRRRDKGVLDQGHIQLPRNDLDPRVLSNSGW
GQTPVKQNTAWEFEESPRSERKNDNGTEAWGSVATQPSNSGGKTDGSIMNSTNTSSVSGW
VSSPPAAVPANTSWGDSNNKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSP
TWGEPQKPKSQNWGDGQRANPAWSAGAGDWADSPSVLGHLGDGKKSGSGWDADGSRSGSG
WNDATRCGTSGWASGTNAKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGAASVKQTG
TGWIGGPLPVKQKDSSEATGWEEPSPPSIRRKMEVDDGTSAWGDPSTYNNKTVNMWDRNN
PVIQSSTTAPATPTTPTLSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGEMPNVHSKA
ENSWGEPSSPSTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASAPAAATALCKPASKS
MQEGWGSGADEMNLGTSQWEDEDGDMWNNAASQESSSSCSSWGNASKKGLQKGMKTPGKQ
DEAWIMSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKVDMDKRGLGMTDYNG
MVTKPLGCRPPISKESSMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNS
ALPNQALGGIASGLGMQNLNSSRQIPSGNLGVFGNSGAAQARTMQQPPVQPLNSSQPSLR
AQVPQFLSPQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQ
MLQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPS
AGKPGMDSFPPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKD
PSQSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDL
IQNSESPASPPVAVPHSWSRAKSDSDKISNGSSISWPPEFHPGVPWKGLQNIDPENDPDV
TPGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTT
APTRPPPGLANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGST
LRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEV
NRFLAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWG
GVPQYSSSLWGPPSADDTRVIGSPTPLNTLLPGDLLSGESI
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagacaagaaaaagaaggaaggtgctcagaaa
aaggctgctgatcaaaaaaccaaagtgccagaacttactaagacctgttcaagccagccc
caacctgcgggtaccagtcccagtacttccaccagcactatttctagcggcagcaatggc
aaacgtgcatctgcctgtggccagcagccagctgcatcccgttacctgcctcgggaggtg
cctccacgctttcgccagcaagaacagaagcagctgttaaagagaggccagccattgccc
acagggagtctgaccagtgtgagcccagcacaggctgctggacctgcaggggccagccct
cctcccctccctggagctggggcacagcaacatcccagcaaactccaaccagatcttggt
cacagtggattggcaggtcactatgaaaattgtcactggggacagcatccctcttacaga
agtgaagcagactgcagctgggataaagtgataatagacaggactgaccaagagctgtgg
ccgtccaccccagtaacagagactgaatctgcctcagaatgtcctaccgacactgactct
gcctccaactgtggctccgagaacagtagcatggctacagggagcacccagagcagcttc
cccggccacccgaagaagacgaatggcagtcatggcaccaatggcacactcgtccaaagc
ccttctaacccgagtgcccttggggcaggagcagccaatgggaatgggggcatggccaga
gtgtggggtgtagccaccggctccagctctggcctggctcactgctctgttggtggtgga
gatgggaaaatggacaacatgattggagatgggagaagtcagaattgctggggtgcttcc
aactccaatgcgggcattaatctcagcctcaatcctaatgccaacccagctgcctggcct
gtacttgggcatgaaggaactgtggcaacaggcaacccttccagtatttgcagtccagtc
agtgccataggtcagagtatgggcagccagaatgggaacccagtgggcaccctgggtgcc
tggggaaacttgctgccccaagagagcacagaaccacaaacgtccacttctcagaatgtg
tctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccttg
aataactcttcaccaaaccctatcaatgcaatgcagacaaacggactgccaaactggggc
atggctgttggtatgggggccatcatcccaccccacctgcaaggccttcctggtgctaac
ggatcatcagtctctcaaggcagtgggagtggtggggaaggaatgggcagttctgtgtgg
ggactgtcccctggcaaccctgccacaggaagtaccaattgtgggttcagtcaggggaat
ggaggagacactgtgaactcagcattaagtgctaagcagaatggatccagcagtgctgcg
cagaaggaggggaatggagggaacgcctgggactcggggcctcctgcagggcctggcatc
ctggcctggggaaggggcaatggcaacggcattgggaatatccattcgggagcttggggc
caccccagccgaagttcttctaatggtgtgaatggggagtgggcgaagcccccaaaccag
cattccagtagtgacatcaatgggaaaggatcaacagggtgggacagtgccagtgctgcc
agccagacccctgccctgcagcctggcagtgaacacatgaactcatgggccaaagccaca
tcttctggaactacagcaagtgaaggaagcagtgaggggtccggcagtcacaatgaagga
agcactgggagggaaggagcaggagagggccggaggcgagacaaaggggttctagaccaa
gggcacatccagttgccaaggaatgatcttgacccaagagttctgtctaatagtggttgg
ggacagactcccgtaaagcaaaacactgcctgggaatttgaagagtcccctaggtctgaa
aggaaaaatgacaatgggacagaggcctggggtagtgtagctactcagccttcaaactca
ggggggaagactgatgggtccatcatgaacagtacaaatacctcttcagtatcggggtgg
gtcagctcgccacctgccgccgtgccagcaaacacaagctggggagacagcaacaacaaa
gcgccaagtggcccaggagtttggggggactcaataagctctactgctgttaacaatgct
gctgccaccaagagtggccatgcttggagtgggactgtaaaccaagaggacaagtcaccc
acctggggtgagcctcagaaacccaaatcccaaaactggggcgatggacaaagagcaaac
ccagcctggagtgcaggagcaggagactgggcagactcaccatctgtccttggacatcta
ggggatggaaagaaaagtggatctggatgggatgctgatggtagtaggtcagggtctggt
tggaatgatgccacgaggtgtgggaccagtggctgggccagtggcaccaatgctaaggtg
aatccaggtacaaactggggggagtctctcaagcctggtccccagcagaactgggctcac
aagccccaagacaacaatgtgagtaactgggggggagctgcttctgttaagcagacaggg
acggggtggattggggggccactgccagtcaagcagaaggacagcagtgaggcgactggc
tgggaggagccttccccaccctccatccgacgcaaaatggaagttgatgatggtacctca
gcttggggggacccaagcacctacaacaataaaactgtaaacatgtgggacagaaacaat
ccagtcatccagagcagtaccacagcccctgccacccccacgacccccaccttgagcagc
accacacaccgggccgagacgccgccttcacaccaggctggcactcagctgaatcggtca
ccactgctcgggccagtttcgtctggctggggagagatgcccaatgttcactccaaggct
gagaactcctggggagagccatcttccccttctaccctggtcgacaatggcacggcagcc
tgggggaagcctcccagtagtggcagtggatgggatcatcctgctgagcccgtggtgcca
tttggaagagccagtgctcctgctgctgccacagccctgtgcaaaccagcttccaaatct
atgcaagaaggctggggcagtggtgcggacgaaatgaacctgggcaccagccagtgggag
gacgaggacggggacatgtggaacaatgctgcctcccaagaaagcagctcatcctgcagc
tcctggggcaatgcctcaaaaaaaggacttcagaagggcatgaagacgcccggcaagcag
gatgaggcctggatcatgagccggctgatcaaacaactcacagacatgggcttcccgaga
gagccagctgaagaggccttgaagagcaacagtatgaaccttgaccaggccatgagtgct
ctgctggaaaagaaggtggacatggacaaacgtggactgggaatgaccgactacaatgga
atggtcaccaaacccctcggctgccgcccaccaatctccaaagagtcttccatggaccgc
cccaccttccttgacaagctcaccctttctttctccaatcaggatggcggcctcgtggaa
gagcccacgacttcaccgtttttgccttccccaagcctgaagctccccctttccaacagt
gcactccccaatcaggccctgggtgggattgcctcagggctgggcatgcaaaacttgaac
tcttctagacagatcccgagtggcaatctgggtgtgtttggcaatagcggagcagcacaa
gccaggaccatgcagcagccgccagtgcagcctcttaattcctcccagcccagcctccga
gctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagca
aaaaacattggtctcagccctgcactattaacctcgccaattaaccctcagcatatgacg
atgttgaaccagctctatcagctgcagctggcataccaacgtttacaaatccagcagcag
atgttacaggcccagcggaatgtttccggacccatgaggcaacaggagcagcaagttgcg
cgcacaatcactaatctgcagcagcagatccagcagcaccagcgccagctggcccaggcc
ctgcttgtaaagcagcctccacctccgccacccccgccgcacctgtctctgcacccctct
gcaggcaaaccgggcatggatagcttccctcctcacccccaggctcctggcctccccgac
ctgcagaccaaagagcagcagtcttcacccaacacctttgctccttatcctcttgccgga
ttgaacccaaacatgaatgtcaacagcatagacatgagcagtggtttgtctgtgaaggac
ccatctcagtcccagtcacgcctgcctcagtggacacatcccaattccatgggtaacttg
tctagtgctgcttctcccctggaccagaatcctagcaagcatggtgctatccctggaggt
ctaagcatcgggcctccaggtaagtcctctattgatgactcttacggccggtacgattta
attcagaacagtgagtcaccagccagtcctccagtagctgttccccatagctggtcacgt
gccaagtctgacagtgataaaatctcaaatggctccagcatcagctggcccccagagttc
caccccggggtcccatggaaaggacttcagaacatcgatcctgagaatgaccctgatgtc
actcctggaagtgtccctactggacccaccattaacaccaccatccaggatgtcaaccgc
tacctcctcaagagtggaggtaagctgtccgatattaaatcaacgtggtcctcaggccca
gcttctcacacgcaagcctctctgtctcatgagctgtggaaggtacccagaaacactact
gcacccaccaggccacctccaggcttagccaatcccaagccttcctctacctggggcacc
agccccctcggctggaccagctcctactcctcgggttctgcatggagtactgacacctca
ggaagaacaagcagctggctcgttctgcgcaatctcacaccccagatcgatggttctaca
ctgcggacgctgtgtttgcagcatgggcctctcatcacattccacctgaacctgacccaa
ggcaatgctgtggtccgctacagttccaaggaggaagccgccaaggcccagaagtctctg
cacatgtgtgtactgggaaacaccaccatcttggctgagtttgctggtgaagaagaagtg
aaccggttcctggcccaaggccaagccctcccacccacctccagctggcagtccagcagt
gggggcagccagcccaggctgggcacctcgggcagcacccatggcctagtgcgcagcgac
actgcccactggaacaccccatgcctgagtggcaaaggcagcagtgagctgctgtggggt
ggggtcccccagtactcgagcagcctgtggggcccacccagtgctgatgataccagagtg
atcggcagccccacgcctctcaacactctgctgcctggtgacctgctcagcggcgagtcc
atctag
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