Rattus norvegicus (rat): 304021
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Entry
304021 CDS
T01003
Symbol
Col8a1
Name
(RefSeq) collagen alpha-1(VIII) chain precursor
KO
K23455
collagen type VIII alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
304021 (Col8a1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
304021
NCBI-ProteinID:
NP_001100570
RGD:
1309361
Ensembl:
ENSRNOG00000039668
UniProt:
A0A8I6AA24
A6IQM2
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Position
11:56245998..56378586
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AA seq
743 aa
AA seq
DB search
MAVPPRPLQLLGILFILSLSSVRLAQAGAYYGIKPLPPQIPPQIPPQIPQYQPLGQQVPH
MPLGKDGLSMGKEMPHMQYGKEYPHLPQYMKEIQPVPRVGKEVVPKKGKEIPLASLRGEQ
GPRGEPGPRGPPGPPGLPGHGMPGIKGKPGPQGYPGIGKPGMPGMPGKPGAMGMPGAKGE
IGPKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGAKGERGPKGPPGPPGLQGPK
GEKGFGMPGLPGLKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGPPGEPGPQGL
IGVPGVQGPPGMPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKG
DRGIGGVPGALGPRGEKGPVGAPGIGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVG
PQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGHKGLPGLPGVPGLLG
PKGEPGIPGDQGLQGPPGIPGIAGPSGPIGPPGIPGPKGEPGLPGPPGFPGVGKPGVAGL
HGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPSPQGEYLPDMGLGIDGVKPPHA
YAGKKGKNGGPYEMPAFTAELTVPFPPVGAPVKFDKLLYNGRQNYNPQTGVFTCEVPGVY
YFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSE
QAAGLYAGQYVHSSFSGYLLYPM
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgccacccaggcctctacagctgctgggaatactgttcatcctttccctgagc
tccgtcagactcgctcaggccggtgcctactatggaatcaagcctctgccacctcaaatc
cctcctcagataccaccacaaattccacagtaccagcccttgggccagcaagtacctcat
atgcctttgggcaaggatggcctttccatgggcaaggagatgccccacatgcagtatggc
aaagagtacccacacctaccccagtatatgaaggaaatccaacctgtgccaagagtgggc
aaggaagtggtgcccaaaaaaggcaaagaaataccattagccagtttgcgaggagaacaa
ggtccccgtggagaacctggaccaagaggaccacctgggccaccaggtttgccaggtcac
ggaatgcctggaatcaaaggaaagccagggccccagggatacccagggattggaaagccg
ggtatgcctggaatgcctgggaagccaggagccatgggaatgccgggggcaaaaggcgaa
attggacccaaaggggaaatcggacctatgggaatcccagggccacaaggacctccagga
ccccatggacttcctggcattgggaaaccgggtgggccagggttaccagggcaaccagga
gcaaaaggtgagagagggcccaaaggaccaccaggacctcccggcctacagggtcccaaa
ggagagaagggcttcgggatgcctggcttgccgggtctcaagggtccgccaggtatgcat
ggccctcctggcccagttgggctaccaggagtaggaaaaccaggagtgactggctttcct
ggaccccagggtcccttggggaagccagggcctccaggggaacctggaccacaaggcctt
attggtgtgccaggcgttcaaggacctcctgggatgcctggagttggaaagccaggtcag
gatgggatccctggccaaccaggatttccaggtggtaaaggggaacagggattaccaggg
ttgcctggacccccaggcctcccaggggtcggaaaaccaggcttcccaggacccaaaggg
gaccggggtattgggggtgttcctggggctcttgggccaaggggagaaaaggggccagta
ggtgctcctggaatagggggtccccctggagagccaggcctacccggaattccaggtccc
atgggccctccaggagctattggtttccctggacccaaaggagaaggtggaattgtagga
ccacagggtccaccaggtcccaagggagagccaggcctccagggcttccctgggaagcca
ggttttcttggtgaagtaggtccccctggcatgaggggtttgcccggtcctataggaccc
aagggagaagctggtcacaaaggattgcctggacttcctggtgttccagggctgcttgga
cccaaaggagaacctggcatacccggggatcagggtctacaggggcccccaggtattcca
gggattgcgggacctagtggccctattggaccccctgggattccaggccccaaaggagaa
ccaggcctcccagggccccctgggttccctggtgtagggaagccaggagtagcaggactt
catggtcccccggggaaacctggtgcccttggacctcaaggccaacctggccttcctggg
ccaccaggccctccaggccccccaggccccccagctgtgatgccccctacaccatcaccc
cagggagagtatctaccagatatgggactaggaattgatggagtgaagcctccacatgcc
tatgcgggcaaaaagggcaagaacggagggccctatgagatgcccgcgtttactgccgag
ctgactgtacctttcccaccggtgggggccccagtgaagtttgacaagctcctatacaat
ggaagacagaactacaacccgcagacgggagtcttcacctgcgaagtcccgggtgtctac
tactttgcttaccatgttcactgcaagggaggcaacgtctgggttgctctcttcaagaac
aacgagcccatgatgtacacatacgacgagtacaagaagggctttctggaccaggcatct
ggaagcgcagtactgctgctccggcccggagaccgggtgttcctccaaatgccttcagaa
caggctgctggactctatgctgggcaatatgtccactcctccttttcaggatatttattg
tatcccatgtaa
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