KEGG   Rattus norvegicus (rat): 304809
Entry
304809            CDS       T01003                                 
Symbol
Kdm5b
Name
(RefSeq) lysine-specific demethylase 5B
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rno01009]
    304809 (Kdm5b)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    304809 (Kdm5b)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     304809 (Kdm5b)
Protein phosphatases and associated proteins [BR:rno01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     304809 (Kdm5b)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    304809 (Kdm5b)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_2 Lipoprotein_20 zf-PHD-like PHD-1st_NSD RPEL
Other DBs
NCBI-GeneID: 304809
NCBI-ProteinID: NP_001100647
RGD: 1565602
Ensembl: ENSRNOG00000060544
UniProt: A6ICC6
LinkDB
Position
13:48554367..48625721
AA seq 1544 aa
MEPATALPPGPRPALPLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTG
ICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVKLNFLDQIAKYWELQGSTLKI
PHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN
PYNLFLSGDSLRCLQKPNLTSDTKDKEYKPHDIPQRQSVQPSETCPPARRAKRMRAEAMN
IKIEPEEATEARTHNLRRRMGCATPKRENEKEVKSTIKQEPTEKKDCVLESEKDKPKSRA
KKTATAVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLLPPLHDVPKGDWRCPKCLAQE
CSKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEED
VTVEYGADIASKEFGSGFPVRDGKIKISPEEEEYLDSGWNLNNMPVMEQSVLAHITADIC
GMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPE
LFVSQPDLLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAV
NFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIE
DEKALRETVRKLGVIDSERMDFELLPDDERQCIKCKTTCFMSAISCSCKPGLLVCLHHVK
ELCSCPPYKYNLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKKSLVSFK
ALIEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQSQLTVN
ELRQFVTQLCALPCVLSQTPLLKDLLNRVEDFQQQSQRLLSEERPRASELQQLLDVSFTF
DVELPQLAEMRIRLEQARWLEEVQQACLDSSSLSLDDMRRLIDLGVGLAPYSAVEKAMAR
LQELLTVSEHWDDKAKSLLRARPRHSLSSLATAVKEMEEIPAYLPNGTVLKDSVQKARDW
VQDVDALQAGGRVPVLETLIELVARGRSIPVHLNSLPRLEMLVSEVHAWKESAAKTFLLE
NSPYSLLEVLCPRCDIGLLGLKRKQRKLKDPLPSGKKRSTKLESLSDLERALTESKETAS
AMATLGEARLREMEALQSLRFANEEKLLSPAQDVETKVCLCQKTPATPMIQCELCRDAFH
TSCVAVSSISQSSRIWLCPHCRRSEKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTV
NWQHRAQQLLSSGNLKLVQDQAGSGLLFSRWPASAGTASAADKVSQPPGTTSFSLPEDWD
NRTSYLHSPFSTGQSCIPLHGLSPEVNELLMEAQLLQVSLPEVQELYQTLLTKPSSAQQA
DRSSPVRPSSEKNDCLRGKRDAINSLERKLKRRPEREGLPSERWDRVKKMRTPQKKKIKL
SHPKDMNNFKLERERSYDLVRNAETHSLPSDTSYSEQEDSEDEDAICPAVSCLQPEGDEV
DWVQCDGSCNQWFHQVCVGVSPEMAEKEDYICVRCTGKDAPSRK
NT seq 4635 nt   +upstreamnt  +downstreamnt
atggagccggccaccgcgctgcccccaggcccgcgcccggcgctgccccttgggggcccc
ggcccgctgggagagttcctgcctccccccgagtgtccggtcttcgagcccagctgggaa
gagttcgcggaccccttcgctttcatccacaagatccggcccatagccgagcagactggg
atctgtaaggtgcggccgccgccggattggcagccaccattcgcttgtgatgttgataaa
cttcattttaccccgcgtatccagaggcttaatgagctggaggcccaaacacgtgtaaaa
ttgaacttcctggaccagattgccaagtattgggagctacagggaagtactctgaagatt
cctcatgtggagagaaagatcttagacttgttccagctaaataagttagttgcagaggaa
ggtgggtttgcagttgtttgcaaggacagaaaatggaccaaaattgccaccaagatgggt
tttgctcctggtaaagcagtgggctcacatatcaggggacattatgagcgaatcctcaat
ccgtacaatttgttcctatctggggacagcctgaggtgtcttcagaagcctaacctgacc
tcggacacaaaggacaaggagtacaaaccccatgatattccccagaggcagtctgtgcag
ccctcagaaacctgccctccggcccgccgagcaaagcgcatgagagcagaggctatgaat
attaaaattgagccagaagaggcaacagaagccaggactcataacctgaggcgccgaatg
ggctgtgccactccaaaacgggaaaacgagaaagaagtgaaaagtaccatcaagcaagaa
cccaccgagaagaaagactgtgtgttagaaagtgagaaggacaagcccaagagccgtgcc
aagaaaaccgccactgctgtggacctgtatgtgtgcctcttatgtggcagcggcaatgac
gaggaccggctgctcctgtgtgacggctgtgacgacagttaccacaccttctgcctgctt
ccccctctccatgatgttcccaagggagactggaggtgtcctaagtgtttggctcaagag
tgtagtaagccacaagaagctttcggctttgaacaggctgcaagggactatacactccgt
acgtttggggaaatggcagatgcattcaaatctgattacttcaacatgccggtccatatg
gttcccacagagctggtggagaaggagttttggcggctggtaagcactattgaagaagac
gtcaccgtggagtatggagctgatattgcttcaaaagagtttggcagtggctttcctgtt
cgagatggcaaaatcaagatttctcctgaggaagaggagtatcttgatagtggctggaat
ttgaataacatgccagtgatggagcagtctgtccttgctcacattactgctgatatatgc
ggcatgaaactgccttggttgtatgtgggcatgtgcttttcttccttctgttggcatatc
gaagaccactggagctattcaatcaactacctgcactggggtgagccgaaaacctggtat
ggagttccaggatatgctgctgagcagcttgaaaacgtaatgaagaagctggctccagag
ctctttgtgtcccagccagacctcctccaccagcttgtgacgatcatgaaccccaatacg
ctgatgactcacgaagtgcctgtgtatcgaacgaatcagtgtgctggggagtttgtcatt
acgttcccgagagcctaccacagtggcttcaatcaaggctttaattttgctgaggcagtt
aacttctgcactgttgattggctgccgttgggccgccagtgcgtggagcattatcgcctg
ctgcaccgctactgcgtcttttcccatgatgagatgatatgcaagatggcttccaaggct
gatgtgttagacgtggtagtggcatccactgttcagaaggacatggccatcatgattgag
gatgaaaaggctttaagggaaactgtccgtaaactgggagtgattgattctgagagaatg
gactttgagctgttgcccgatgatgagcggcagtgtataaagtgcaaaactacgtgcttc
atgtctgccatctcctgctcctgtaaacctggcctgcttgtttgcctgcatcatgtcaaa
gagctgtgctcctgtcccccttacaagtataacctgcggtatagatacactctggatgat
ctctatccgatgatgaatgcgttgaagcttcgagcagagtcgtacaatgaatgggcctta
aatgtgaatgaagccttggaagcaaagattaataagaagaaaagtctcgtcagctttaaa
gctttgattgaagaatcagaaatgaagaaattcccagacaatgatcttttgcgtcacctt
cgcctagttacgcaggatgcagaaaagtgtgcctctgttgcccagcagttgcttaatggc
aaaaggcaaacgaggtatcgatctggtggagggaagtctcagagtcagctgacagtgaat
gagcttcggcagttcgtgactcagctgtgcgctcttccctgcgtccttagtcagacacca
ctgctaaaggatctcttgaatcgtgtggaagatttccagcagcaaagccagagactgctg
tctgaggagaggccccgtgcttctgagcttcagcagttgctggatgtcagcttcactttt
gatgttgaacttccacagctagctgagatgcgtatccgcttagaacaggcccgttggcta
gaagaggttcagcaggcttgcctggactccagctccctttctttggatgatatgagacga
ctcatagacttaggggtggggctagctccatattctgccgtggagaaagctatggcccgc
ctgcaggaactgctaacagtgtcagagcactgggacgacaaagccaagagtctcctcaga
gcaagacctcggcattccttgagtagccttgctacagcagtaaaagagatggaggagatc
cccgcctatctgcccaatggtacagtcctgaaggattctgtgcagaaagccagagactgg
gttcaggatgtagatgcattgcaggcaggaggacgcgtgccagtgttagaaacactcatt
gaacttgtcgcaagaggccgatccatcccggtacatctgaattctttacccagattggaa
atgctagtatccgaggttcatgcttggaaagaaagcgctgctaaaacattcctgcttgag
aattcgccatactctctgttagaggttctttgtcctcggtgtgacattggccttttggga
ttgaaaaggaagcagagaaagttgaaggatcccttgccaagtgggaagaagagaagcacc
aagttagagagtctgagtgatctggaaagggctctgactgagagcaaagagacggcgtca
gctatggcaactcttggggaagctcgcctacgagagatggaagctttgcagtctctcaga
tttgccaatgaagagaaattgctgtcacctgcccaagatgtggagacgaaggtttgcttg
tgtcagaagactccagccactcccatgattcagtgtgaactctgcagggatgctttccat
actagttgtgtggcggtgtccagtatttcacaaagctcccgaatctggctttgtcctcac
tgtcgaaggtcagagaagcctccattagagaaaattctgcctctgctggcctccctacag
cgtataagagttcgtcttcctgaaggggatgcactccgatacatgattgaaagaaccgtg
aactggcaacatagagcccagcaactgctttcttcagggaatctaaaacttgtgcaggac
caagcgggttctggactgttgtttagcagatggccagcctcagcaggaacggcgtcagca
gcagacaaggtgtctcaacctcctggcacaacatccttttcattgccggaagactgggac
aacagaacctcatatttacactctcccttctctaccggtcagagttgtatcccccttcat
ggtttgagtccagaggtgaatgaattgctgatggaagcccagttgctccaggtgtccctc
cctgaagtccaggagctttatcagactttacttacgaagccaagctctgctcagcaagcc
gaccgaagctcaccagtcagacccagcagtgagaagaacgattgtcttcgagggaaacga
gatgcaatcaacagtcttgagagaaaactgaaaagacgcccagaaagagaaggccttccc
agtgaacggtgggatcgagttaaaaaaatgcggacccctcaaaagaagaaaatcaaactg
agtcaccccaaggacatgaacaatttcaaattagaaagagagcgtagctatgacttagtc
cggaatgctgaaactcattccctgccctcagacacatcctactccgagcaggaggactct
gaggatgaagatgccatctgtccagctgtgagctgcctgcagccagaaggagatgaggtg
gactgggtccagtgtgatggcagctgcaatcagtggtttcatcaggtctgtgttggtgtc
tctccagagatggcagagaaagaagactacatctgtgtgcgctgtactggaaaggacgca
ccaagccgaaagtaa

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