Rattus norvegicus (rat): 304978
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Entry
304978 CDS
T01003
Symbol
Copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
304978 (Copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
304978 (Copa)
Membrane trafficking [BR:
rno04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
304978 (Copa)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
304978 (Copa)
Exosomal proteins of bladder cancer cells
304978 (Copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
304978
NCBI-ProteinID:
NP_001128012
RGD:
1310525
Ensembl:
ENSRNOG00000006247
UniProt:
A6JG21
LinkDB
All DBs
Position
13:87078853..87119256
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEAPEGLGEDTLGKGQEEGGGWDVEEDLELPPELDVPSGVAG
GAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVVQFGPYKQLFL
QTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLSTVG
KFEDAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLCMEIERKKLPKETLDQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctaaccaaattcgagaccaaaagcgcgcgggtgaaaggccttagttttcatcctaaa
agaccctggatcctgaccagtttacataatggggtcatccagttatgggactatcggatg
tgcaccctcattgacaaatttgatgaacatgatggtccagtgcgtggcattgacttccat
aagcagcagcccctattcgtctctggaggagatgactataagattaaggtttggaattac
aaacttcggcgctgcctcttcacattgcttgggcacttggattatatccgcacgacgttt
tttcatcatgagtatccttggattctgagcgcctcagatgatcagaccattcgggtgtgg
aactggcagtctagaacctgtgtctgtgtgttaacggggcacaaccattatgtaatgtgt
gctcagttccacccctctgaagacctggtggtatcagctagcctggaccagactgtccgc
gtttgggatatttctggtctaaggaaaaaaaacttgtctcctggtgcggtggagtccgat
gtgagaggaataactggggtcgatctgtttggaactacagatgcagtggtgaagcatgtg
ctagagggccatgaccgtggagtgaattgggctgccttccacccgactatgccccttatt
gtatcgggggcagatgaccggcaagtgaagatatggcgcatgaatgaatcaaaggcatgg
gaggttgacacctgccggggccattacaacaatgtgtcttgtgccgtctttcaccctcgc
caagagttgatcctcagcaattctgaggacaagagtattcgagtctgggatatgtctaag
cggactggggttcagactttccgtagggatcatgatcgcttctgggtcctggctgcccat
cccaaccttaacctctttgcagcaggccatgatggtgggatgattgtatttaagctggaa
cgggagcgtccagcctatgctgttcatggcaatatgctgcattatgtgaaggaccgattc
ctccgtcagctggatttcaacagctccaaagatgtagctgtgatgcagttgcggagtggt
tctaagttcccagtgttcaacatgtcatacaatccagcagagaacgccgtgctgctgtgc
accagagcaagcaatttagagaatagtacctatgatctgtacaccatccccaaagatgca
gactcccagaatcctgatgcccctgaagggaaacgatcctcgggcctgacagcggtttgg
gttgctcggaatcggtttgctgtcctagatcgaatgcactcgcttctgattaaaaacctg
aaaaatgagatcaccaagaaaatccaggtgcccaactgtgatgaaatcttctatgctggt
acaggcaacctcctgcttcgggatgcagattccatcacactctttgatgtccagcagaag
cgaactctggcatcagtgaagatttccaaggtgaaatatgttatctggtcggcagacatg
tctcatgttgcactcctggccaagcatgccattgtgatctgtaaccgcaagctggatgct
ctgtgtaacattcatgagaacattcgtgtcaagagtggggcctgggatgaaagtggggtg
tttatctataccacaagcaaccacatcaaatatgctgtcaccactggggaccatgggatc
atccgaactctggatttgcccatctatgtcacaagagtgaagggcaataacgtatactgc
ctggacagggagtgtcgtcctcgggtgctcaccattgaccccaccgaattcaagttcaaa
ctggccctgatcaacaggaagtatgatgaggtactgcacatggtgaggaacgccaaacta
gtaggccagtcgatcatcgcttacctccagaagaagggttatcctgaagtggcactgcat
tttgtaaaggatgagaaaactcgtttcagcttggccctggagtgtggaaacattgagatt
gctctagaggcagccaaagctctggatgacaagaactgctgggagaagctgggagaagtg
gccctgttacagggcaatcaccagattgtagaaatgtgctatcagcgcaccaaaaacttt
gacaagctctccttcctgtaccttattactggcaacctggagaagcttcgaaagatgatg
aagattgctgagatccgaaaggacatgagtggccattatcagaatgccctgtacctgggt
gatgtgtcagagagagtgcgaatcctgaagaactgtgggcagaaatccctggcctacctc
acagctgctacacatggcttagatgaggaagctgagagcctgaaggagacatttgaccct
gagaaggagacaatcccagatattgatcctaatgccaagctgctccagccaccagcacct
atcatgccattggataccaattggcccttactgactgtgtccaaagggttctttgaaggc
tccattgcaagcaaggggaagggaggcgcgttggctgccgacattgacatcgacactgtt
ggtactgaaggctggggagaggacgcagagctgcagctggacgaagatgggtttgtggag
gctccggaaggtttgggggaggatactctcggcaagggacaagaggaaggaggtggctgg
gacgtagaagaagatttggagctcccacctgagctggatgtaccctctggggttgccggt
ggtgctgaagacggtttctttgtgcccccaaccaagggaacaagcccaactcaaatctgg
tgcaataactcccagcttccagtggatcacatcctggcaggttcttttgaaacagctatg
cggcttcttcatgaccaggtgggagtagtccagtttggcccctataagcaactgtttcta
cagacatacgcgcgaggccgcaccacctaccaagcactgccctgcttgccctccatgtat
agctaccctaatcgcaattggaaggacgcagggctgaagaatggtgtgccggctgtgggc
ctcaagcttaacgacctgatccagcggctgcagctctgttaccagctcagcacagtcggc
aagtttgaagacgctgtggagaaattccgctccatcctactcagtgtgccccttcttgtg
gtggacaataaacaggagattgcagaggcccagcagctcatcaccatctgccgtgagtac
attgtgggtttgtgcatggagatagaaaggaagaagctacctaaggagaccctagaccag
cagaagcgcatctgtgagatggcggcttatttcacacactcaaacctgcagcctgtgcac
atgatcctggtgctgaggacagccctcaacctcttcttcaagctcaagaacttcaagaca
gctgccacctttgcccgacgcctgctggaacttgggcccaaacctgaagtagcccaacag
acaaggaaaatcttgtctgcctgtgagaaaaaccccacagatgcctgccagctcaattat
gacatgcacaacccctttgacatttgtgctgcatcttaccggcccatctaccgtggaaaa
ccagtggagaagtgtccactcagtggggcctgctattcccctgagttcaaagggcagatc
tgcagggtcactacagtgacagagattggcaaagatgtgattggtctgaggatcagtcct
cttcagtttcgctaa
DBGET
integrated database retrieval system
