KEGG   Rattus norvegicus (rat): 306222
Entry
306222            CDS       T01003                                 
Symbol
Lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    306222 (Lsm5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    306222 (Lsm5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    306222 (Lsm5)
   03041 Spliceosome [BR:rno03041]
    306222 (Lsm5)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     306222 (Lsm5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     306222 (Lsm5)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    306222 (Lsm5)
SSDB
Motif
Pfam: LSM SM-ATX LSM12_LSM LSM14
Other DBs
NCBI-GeneID: 306222
NCBI-ProteinID: NP_001100759
RGD: 1308655
Ensembl: ENSRNOG00000042126
UniProt: A0A8I5ZRU9
LinkDB
Position
4:complement(87281260..87284476)
AA seq 91 aa
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcggctaacgcgaccacgaacccgtctcaactcctgccactagagcttgtggacaag
tgtataggatcaagaattcacattgtgatgaagagtgataaagaaatcgtgggtacactt
ctaggatttgatgactttgtcaatatggtgttggaagatgtcacagagtttgaaattaca
ccagaaggaagaagaattacaaaattagatcaaattctactaaatggaaataatataaca
atgctggttcctggaggagaagggcctgaagtatga

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