Rattus norvegicus (rat): 306274
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Entry
306274 CDS
T01003
Symbol
Ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
306274 (Ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
306274 (Ercc6)
03400 DNA repair and recombination proteins [BR:
rno03400
]
306274 (Ercc6)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
306274 (Ercc6)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
306274 (Ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
306274
NCBI-ProteinID:
NP_001100766
RGD:
1311509
Ensembl:
ENSRNOG00000030017
UniProt:
A6KFV6
D3ZS47
LinkDB
All DBs
Position
16:7771311..7841895
Genome browser
AA seq
1325 aa
AA seq
DB search
MPHEEIPNSTQPQGQDWLPGQHVSADRDIPAGQETAGDSEAGKCLSSPSCDHGPSTSAEA
CVLAATRWGPALLHIDRHQIPAVEPSAQALELQGLGVDVYDQAVLEEGVLQQVDSAMHEA
SRVAQRADAEKEYQSVLDDLMSCTTSLRQINKIIEQLSPQAASNRDINRKLDSVKRQKYN
KEQQLKKITAKQKRLQAILGGAEVHVELDHGSLEEEDAEPGPSCLGSMLMPAQESAWEEL
IRTGQMTPFGTPAPQKQEKKPRKIMLNEASGFEKYLADQAQLSFKRKKQAANKRTAKKAV
VVSESSRGPNETKPNQRSQALSQTDKRLKKHIRKLQRRALQFQGKVGLQRGKRPLEPEER
PGAEGDTEAVLSSDDISYELKPLRKGQKYEKKVPVQEIDDDFFPSSEEEDEAVEGRGGGR
KVSRRPDDGDEDYYKQRLRRWNRLRLQDKEKLKLEDDSEESDAEFDEGFKVPGFLFKKLF
KFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDIVHCHGVL
ITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQNNLRELWSLFDFTFPGK
LGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSL
PDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQIFSGLVALRKICNHPDLFSGGP
KNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEVFLR
AHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDW
NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFF
KSNDLYELFTLTSPDASQGTETSAIFAGTGSNIQTLKCHFKKRTPPVLQMDPKRKKPLVS
DTSVNGATVMEEKSQGSGATGSVPSTESGPLKSDRHTDGSRASSVGFGEEADAGSTLEHL
SGLSGDSPAVDHTSRLSAVASTSEKQGSSYEGECCQAQTGPVHLSEQTEGHFSKHKSKRK
HDAAEEETTEKCPQPKQKAKNSRHHRDAKFEGTRVPHLVKKRRYHQQTTEQESGAKDRSS
DDYVLEKLFKKSVGVHSVVKHDAIIDGSSPDYVLVEAEANRVAQDALKALRLSRQQCLGA
TSGVPTWTGHRGISGAPAGVKMRARNHMILPERLESDGEQLAGAAAAAAPPCSTEHDALL
VDMRNFIAFQAQVDGQASTQEILQAFESKLSVAQSCVFRELLRNLCNFHRTPGGEGIWKL
KPEYC
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atgccccatgaggaaatccccaactccactcaacctcagggccaagactggttaccaggt
cagcatgtcagtgctgacagagacataccagctgggcaggagactgctggggactcagag
gcggggaagtgcctctcctctccttcctgtgaccatgggccgtccacatctgctgaagct
tgtgtactggcagccacaaggtgggggcccgccctgctgcacatcgaccggcatcagatt
cctgcggtggagcccagtgctcaggccctggagctgcagggcctgggtgtggacgtctac
gaccaggccgtcctggaggaaggtgtgcttcagcaggtggacagtgcaatgcatgaggcc
agccgtgtggcccagcgtgctgatgcggagaaagagtatcagtcagtcctggacgacctc
atgtcatgtacaacatccctgaggcaaatcaataaaattatagagcaacttagccctcaa
gctgccagcaacagagacatcaacaggaaactagattctgtgaaacgacagaagtacaac
aaggaacaacagctaaagaagataactgcaaaacagaaacgtctccaggccattctcgga
ggagcggaggtccatgtggaactggatcatggcagcttagaggaggaagatgcagagcca
ggcccatcatgtctcggcagtatgctcatgcctgcccaggagagcgcctgggaagaactt
atccgcactggccagatgacaccgttcggtaccccagcccctcagaaacaggagaaaaag
cctagaaaaataatgctcaatgaagcatcaggctttgaaaaatatttggcagaccaagca
caactttcttttaaaaggaaaaaacaagctgctaataaaagaacagctaaaaaagctgtg
gttgtatctgagtcaagccgaggaccaaatgaaactaagccaaaccagagaagccaagcg
ctctctcagacagacaagcgcctgaagaagcacatcaggaagctccagaggagggcgctg
cagttccagggcaaagtgggattgcaaagggggaagagacctctggagcctgaggagagg
ccaggggcagagggagacactgaggccgttctgtcttccgatgacattagctatgaactg
aagcctcttcggaaaggacaaaaatacgagaagaaagtcccagtgcaggagatcgacgat
gacttctttccaagttctgaggaggaagatgaagctgtggaaggaagaggaggaggccgc
aaggtctccaggcgcccagacgatggagatgaggattattataaacaacgattaaggagg
tggaataggctgaggctgcaggacaaagagaagctgaagcttgaagacgattctgaggag
agcgatgctgagtttgacgaaggtttcaaagtgccgggttttctgttcaaaaagctcttt
aagttcgagggactcggccccactctcattgtctgcccaacgacagtgatgcatcagtgg
gtgaaagaattccacacgtggtggcctccattcagagtggcgattctgcacgaaacaggc
tcctgtgcccacagaaaggagaggctggttcgagatattgttcattgtcatggagttttg
ataacttcgtattcctacattcgactgatgcaagacgacattagcaggcatgactggcac
tacgtcatcttagacgaaggacataaaattcgaaatccaaatgctgcagtcacccttgct
tgcaaacagaataacctgcgagagctgtggtcactcttcgactttaccttcccaggaaag
ctaggcacgttgcctgtgttcatggagcagttctctgtccccatcaccatgggggggtac
tccaatgcttccccagtacaggttaaaactgcctataagtgtgcgtgtgtcttgagagac
acgataaacccgtacctactgcgaagaatgaaatcagatgtcaagatgagcctttcgctg
ccagataaaaatgaacaggtcttattttgccgtctaactgatgagcagcataaagtctac
cagaatttcatcgattccaaagcagtttacaggattctcaatggagagaatcagattttc
tctggacttgtagctctgaggaagatctgcaaccaccctgacctcttttctggcggtccc
aagaacaccagtgctcttccagaggatggactggaggaggagcagttcggatactggaaa
cgctctgggaaaatgattgttgttgagtctttgctgaaaatctggcacaagcagggtcag
cgggtgctgctgttttcccagtcaaggcagatgctgcacatactggaagtgttcctgaga
gcccacaagtattcctatctcaagatggatgggaccactaccatagcatccaggcagccg
ctgattacaaaatacaatgaggacacgtccatctttgtctttcttctgaccacacgggtg
ggcggcttaggagtgaacctgaccggggccaacagagtcatcatctacgaccctgactgg
aatccaagcaccgacacacaggcacgggagcgagcatggaggatcggccagaagaagcag
gtgactgtctacaggcttctgacggccggcaccatagaggaaaagatctatcaccgacaa
atcttcaagcaatttttgacaaacagagtgctaaaagaccctaaacaaaggcgctttttc
aagtccaatgatctctatgagctgtttactctgactagtcctgatgcctcccagggcact
gaaacaagtgctatttttgcaggaaccggatctaatattcagacactgaaatgccatttt
aaaaagaggactccgccagtcctacaaatggatcccaaacgcaagaagcccctggtttct
gacacatctgtaaatggtgccactgtgatggaagaaaaatctcaggggtcaggagctacg
ggcagtgtcccttctacagaaagtggccctttgaaaagtgaccgtcacacagatgggagc
agagccagcagtgttggttttggagaagaggcagatgcagggtccacgctggagcatctc
tcagggctgagtggagattctccagcagttgaccacacatccaggctgtcagctgtggcg
agcaccagtgagaagcagggctcttcctatgaaggggagtgctgccaggctcagacggga
cctgttcacctgagtgaacaaacggaaggtcatttctctaagcacaaatcaaaaaggaaa
catgatgcagcggaggaagagaccacagagaagtgtccacagcccaagcaaaaggccaag
aactccaggcatcacagagatgctaagtttgagggaactcgagtcccacacctggtgaag
aagaggcggtaccatcagcaaaccactgagcaggagagcggagccaaggaccggagcagt
gatgattatgttttggaaaagcttttcaaaaaatcagtgggcgtgcacagcgtcgtgaag
catgatgccatcatagatgggtccagtccggattatgtgctggtggaggcagaagccaac
agagtggctcaggatgccttgaaagctctgaggctctctcgtcagcagtgcctgggggca
acatctggtgttcccacctggactggccacaggggtatttccggtgcaccagcaggagta
aaaatgcgagcacgaaaccacatgattttgccggagcgtttggagagtgacggcgagcag
cttgctggggctgcggctgcggctgcgcctccctgcagcacagagcacgacgcccttctg
gtggacatgaggaacttcattgctttccaggctcaggtggatggccaggccagcactcag
gaaatcctacaggcgttcgaatccaagctgtctgtggcacagtcctgtgtcttccgagaa
ctactgaggaatctgtgcaatttccatagaactcctggtggtgaagggatttggaaactg
aagccagagtactgctaa
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integrated database retrieval system
