Rattus norvegicus (rat): 307446
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Entry
307446 CDS
T01003
Symbol
Ythdc2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
307446 (Ythdc2)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
307446 (Ythdc2)
Spliceosome [BR:
rno03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
307446 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
Ank_4
ABC_tran
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
307446
NCBI-ProteinID:
NP_001414131
RGD:
1563192
Ensembl:
ENSRNOG00000039241
UniProt:
A0A8I5ZKH1
LinkDB
All DBs
Position
18:37517286..37582551
Genome browser
AA seq
1434 aa
AA seq
DB search
MSRPSSVSPRPPAPSGGGTGGGGGGPASCGPGSGGRAKGLKDIRIDEEVKIAVNIALERF
RYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMT
CNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQ
VPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFK
NGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVL
LRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLF
IRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYS
AQENTFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDI
WLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSK
ASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYH
HSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRY
QVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDA
LNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQEL
CLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLP
VEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSD
HMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGG
DIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKK
IPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLTSNALQE
PSSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLR
RMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSN
NSRKSSADTEFSDGSTAAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVKST
DSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSN
ERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRK
ESLPFQFAHHLLNPWNDNKKVQISRDGQELEPLVGEQLLQLWERLPLGEKTTSD
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctcgccgcgtccgccagctcctagcggaggcggcaccgga
ggcggtggcggcggcccggcttcgtgtggtcctggaagcggtggccgggccaaaggcctc
aaagacattcgtatcgacgaggaggtgaagatcgctgtcaacattgctctggagcgcttc
cgatacggtgaccagagagaaatggaatttccttcttctctgaccagtacggaaagagct
tttattcaccgactaagtcaatctcttggtttagtttctaaaagtaaaggaaagggagca
aatagatacctaactgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacc
tgtaatttgactcataatacaaaacatgctgttaggagcctaattcagagatttcctgtc
accaataaagaacgtactgaacttctacctaaaacagaaagaggaaatgtgtttgcagtt
gaagctgaaaaccgagaaatgagcaagacaagcgggcgactcaacaatggcatacctcaa
gttcctgtgaaaaggggagagtctgaatttgactcattcaggcagtctttaccagttttt
gagaaacaagaagaaattgttaaaataattaaggaaaataaagtagttttgattgtagga
gaaactgggtctggaaagaccacacagattcctcagttcctgttagatgattgctttaaa
aatggcatcccctgccgaatattttgtactcaaccgagacgattagcagctattgctgtg
gctgaaagagttgctgcagagagaagggaaaggattggtcaaacaattggttatcagatc
cgattagaaagcagggtttcaccaaagacacttctgacattttgcactaatggggtattg
cttcgtacattgatggcaggtgatagcacattgtcaactgtgactcatgttattgtggat
gaagtgcatgaaagggatcgattcagtgattttttacttacaaagttaagagatttgttg
caaaagcacccaactttgaaattaattctttctagtgctgctttggatgtgaatctcttc
ataagatattttggaagttgtccagtgatatatatacagggaagaccatttgaagtaaaa
gaaatgtttctggaagatattttaagaactaccggatatacaaacaaagaaatgttaaag
tacaaaaaggaaaagcaacgagaggaaaagcaacagaccaccctcacagaatggtactca
gctcaagagaatactttcaagcctgaatctcagagacagagagctgttgctagtgtgtct
gaggagtatgacttattggatgatggaggtgatgctgtcttcagtcagctgacagaaaaa
gatgtgaattgccttgaaccatggttaatcaaggaaatggatgcctgcctttctgacata
tggctacataaagatgtcgatgcttttgctcaggtctttcatcttattttaactgaaaat
gttagtgttgattataggcatagtgagaccagtgcaacagctctgatggttgcggcagga
cggggttttacgagccaagtagagcaattaattagtatgggagccaatgtacacagtaaa
gcatcaaatggctggatggctttagattgggctaagcactttggacagactgaaattgtg
gatcttctagaatcttacagtgcttcattggaatttggaaatctagacgaaagttccttg
gttcaaaccaatggaaatgacctcagtgcagaagacagagagctgttgaaagcttaccat
catagttttgatgatgaaaaggtagacttggatttgatcatgcatcttctatataatatc
tgccatagttgtgatgctggtgcaatattaatttttctacctggatatgatgaaattgtt
ggtttgagggatcgcatcctctttgatgacaagcgttttgctgacaatacacatagatat
caagtctttatgcttcattcaaatatgcagacatctgatcaaaagaaggtattaaaaaat
ccacctgcaggtgtccgaaaaataatcctttccaccaatattgctgaaacaagcatcact
gtcaatgatgttgtctttgttatagattctggtaaggtgaaagagaaatcctttgatgca
ctgaattttgttacaatgttaaaaatggtatggatttccaaagctagtgccatacagcgc
aaaggcagagctggacgatgtagacctggaatttgtttccgactgtttagtagacttcga
tttcagaacatgctggaatttcagactccagaactcttgagaatgccattgcaggagctt
tgtttgcataccaagctgttagccccagtcaattgtaccattgctgacttccttatgaaa
gctcctgaaccacctccagccttaattgtaagaaacgctgttcagatgctcaagacaata
gatgcaatggatgcatgggaagatctgactgaacttggctatcatttggctgatttgcca
gtagaaccacatcttgggaaaatggtcctgtgtgctgttgttttaaagtgtctggacccc
atccttacaatcgcctgcacgctagcttatcgtgatccttttgtactgcctacccaggcc
tctcaaaaacgtgcagctatgctttgtaggaaacgtttcacggcagggactttcagtgac
cacatggcacttctgagagcatttcaggcatggcagaaagcacgaagtgatgggtgggag
cgagccttttgtgaaaagaattttctttcacaagctactatggaaatcattataggcatg
agaacacagttgcttggtcagcttagagcatcaggttttgttagagcacgaggtggtggt
gacattcgagatgttaacacaaactccgagaattgggctgttgttaaagctgcattggta
gcaggcatgtatcctaatttagtccatgtggacagagagaatgtagtattgacagggcca
aaggaaaaaaaagtacgctttcatcccacttcagttctcagtcagcctcagtacaaaaag
attcctccagccaatggtcaggctgcagcaattcaggcattgcccacagattggcttatt
tatgatgaaatgaccagagcccatagaattgctaatatcagatgttgttcagcagtgaca
cctgttactgttctggtgttctgtggaccagccagactgacaagtaacgctcttcaggaa
ccttcatcctttagagcggatggcattcccaatgatagcagtgacagtgagatggaagat
agaactaccgccaatttggctgctttgaaacttgatgaatggcttaacttcaagttagag
ccagaggctgccagtttattgctacagctcagacagaagtggcatagcttgtttttacgc
cgaatgagagcgccatctaaaccttggtctcaagtcgatgaagctaccatacgagcaatt
atagctgtattaagcactgaagagcagtctgctggtttacagcaaccatctggaattggc
cagaggccaagacccatgtcttcagaagaacttcctttggcttcatcctggagatctaat
aatagtaggaaaagttcagctgacactgagttttctgatggatctactgctgcagaaaga
gtactgatgaaatctccatctcctgccttacatccacctcagaagtacaaagatagaggc
attttacatcctaaacggagcacggatgaccggtcagatcaatcgtctgtgaaatccaca
gacagcagcagttacccaagtccttgtgctagcccctctcctccatcctcaggaaagggc
tcaaaatctccttcaccaagaccaaatatgcctattcgttacttcataatgaagagtagc
aatctgagaaaccttgaaatttctcagcagaagggtatctggtctacaacccctagtaat
gagcggaagctaaatcgagcgttttgggagagcagcatggtttacttggtattttctgtt
caaggatctggacatttccagggattttctaggatgtcttctgagataggaagggagaag
agccaagactgggggtcagctggactaggtggagtattcaaagtggaatggatacgcaaa
gaaagccttccctttcagtttgcacaccatttactcaatccttggaatgacaacaagaaa
gtacagataagcagagatgggcaggagctagaacctctggttggggaacagttactccag
ttatgggagcgtctcccattgggggaaaaaactacatctgattga
DBGET
integrated database retrieval system
