Rattus norvegicus (rat): 307726
Help
Entry
307726 CDS
T01003
Symbol
Chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
307726 (Chd9)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
307726 (Chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
307726
NCBI-ProteinID:
XP_038953982
RGD:
1306795
Ensembl:
ENSRNOG00000049302
UniProt:
A0A096MJV7
LinkDB
All DBs
Position
19:complement(32114379..32337488)
Genome browser
AA seq
2883 aa
AA seq
DB search
MTDPMMDFFDDANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
VHQKMADFEQLNQFDSMKFHQVNQSFGSPVEHVLSPHSQFNCSPIHPPNQPNGLFQDVAD
GSPMWGHQTATGLSNQNGSPFHQQGHSHSLHQNKSFVTHHDFALFQAGEHQTQCSSLRSQ
QNRTNLNPGQNSLGQAKSFIDTNVSGAHRVNVNHLTSAPSSQQTLPVQFSPTANPPAHFL
KCSSQQDGSYNRPSPSMTSCSVSNSQPFPAHYSFSSGHVSPSSLLQSPAGLTPSHSNQAL
SDFAGSNSFSPHRGMKQEPTPHILNPTPSLNSNNFQILHSSHPQGNYSNSKLSPMHMDFP
DPADSGPPMGHFNDHVETNGFSSLDENLLHQVESHAEPFAGLDPEDLLQEGLLPQFDESP
FGQDNSNHVLDHDLDRQFTSHLMARPSDMAQTQLQYQARGWPSPLPNSHQHVPSRSHLCL
QRQPPSSKKSDGSGTYSRLQNTQVRVMSEKKPRKKAESESKQEKANRIISEAIARAKERG
ERNIPRVMSPENFPSSSVDGKEEKRAQRVKSKPKDRDNRKPKACSKLKEKTKIGKLIITL
GKNHKRRSESSDELSDAEQMPQHTFKEQHSQKRRSNRQVKRKKYAEDAEGRQCEEEVRGS
LKVKRTSAPPPGEQPLQLFVENPSEEDAAIVDKILACRTVKKEVSPGVMLDIEEFFVKYK
NYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFLADMEEEPFNPDYVEVDRILEV
SFCEDKDTGESVVYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRQLDRPP
SNIWKKIDQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYE
VLLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQGR
IIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHK
VLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRR
LKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELR
KCCNHPYLIKGAEEKIIGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKV
LIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG
GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRAS
LKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQ
ILLRRTKTITIESEGCGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDLDAISGRN
SLVIDTPRIRKQTRPFSATKDELAELSEAESEGEEKPKLRRPCDRSGGYGRTECFRVEKN
LLVYGWGRWREILSHGRFKRQLNEHDVEVICRALLAYCLVHYRGDEKIKGFIWDLITPTE
DGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQKAEWLRKYNPEQLLQDEGYKKHVK
HHCNKVLLRVRMLYYLKQEVIGNESQKVFDGVDASDIDVWVPEPDHSEVPAAWWDFDADK
SLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAP
AIFKDDIEDDVSSPGDLVIADGEGQLMEGDKVYWPTPSALTTRLRRLITAYQRTNKNRHI
QQAQPTFSVPASVMQPLYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPDR
GQFDWTKFRALARLHKKTDNSLEKYLCAFMAMCRRVCRLPSKEELVDPNIFIQPITEERA
SRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDLPIWWECGSHDRDLLIGAAKHGVSR
TDYHILRDPELSFMAAQRSYSQSKVTHSRTSTPLLQQYQVVLSASPLTSSPRLLGAKGPL
VEDVRVKSESLAEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQAPGEQKSGGKSETD
RRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRS
GSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREGTPHAKAYDEESVAS
LSATQDETQDGTQDSFQASNGAPESAHLLQGGYMLAASYWPKDRVMINRLDSICQTVLKG
KWPSARRHYDANTVASFYTTKLLDSPGAATEYSEPSVPTPPAVAVKEEHEQSPQMSKVKK
HVREKEFTVKIKDEGGLKLTFQKQGLAQKRPFDGEDGAVGQQQCLPRPRELQSTSETSVV
NTSKSIPASGSSIQSTLGANGAILDSQPIVKKRRGRRRNVEGADILFLNRNKPPNHISTG
MNPALSYPQPQRIPDTESPVPVINLKDGTRLAGDDAPKRKDLDRWLKEHPGYVEDLGAFI
PRVQLHEGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPLKDLCRFL
KENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSGVPKATIAAAA
PGSSGPGNPLLANGLLPGVDLTALQALQQNLQNLQSLHVTAGLMGMPAGLSSGGEAKTMA
AMFPMLFSGMAGLPNLLGMGGLLSKTAESGAEGKKGNDSKELEGKKERTESQSPENGGER
CVPGSPSTSSTAAATKPLALNPLLLSNMLYPGMLLTPGLNLHLPALSQSNTFDVQKNKSS
DLESSKSVEIKEEDSRGRDQEEKGGTEPSPLNENSTDEGSERASSGSDSSSSSSEDSDSS
NED
NT seq
8652 nt
NT seq
+upstream
nt +downstream
nt
atgacagacccaatgatggacttttttgatgatgccaatctctttggtgagactttagaa
ggcttgtcggatgatgcatttgtacagccaggccccgtctcgctagtcgatgaactgaac
ttgggtgcagagttcgaacctttgcacatagactcactgaaccatgtacaaggtacccca
gtgcatcagaagatggcggacttcgaacagttaaaccaattcgactcaatgaaatttcat
caagttaatcagtcttttggcagccctgttgaacatgtactatccccacactctcagttt
aattgctctccaatccatccccccaaccaacccaatggcttgtttcaagatgtagcagac
ggcagcccaatgtggggtcaccagacagctactggcctctctaatcaaaatggatccccc
tttcatcaacaaggacattcacactctctgcatcaaaataaaagctttgtgacgcaccat
gattttgccttatttcaggccggtgaacatcaaacacagtgttcttccctccgctcacaa
caaaacagaaccaatcttaacccagggcaaaactctcttggccaggctaaaagttttata
gacactaatgtttccggtgcacaccgagttaatgttaaccacctaaccagtgccccttcc
tcacagcagactcttccagtgcagttttctccgacggcgaaccccccagcacacttcctc
aagtgtagcagccaacaggacggcagctacaacagaccttctccgagtatgacttcctgc
tctgtgagtaactcgcagccgtttcctgcacactattccttctccagcggtcacgtgtcc
ccaagcagtctccttcagtcaccggcaggtctcacccccagccattcaaatcaggcttta
tctgattttgctggaagtaactccttttcacctcataggggaatgaagcaagagcccact
ccgcacatcctgaaccccactccatcactgaattcaaataattttcaaattttgcattcg
tcacatcctcagggtaattatagcaactcaaaattatcacccatgcacatggacttcccg
gatcctgctgactcaggacctccaatgggtcatttcaatgaccacgtggaaaccaatggt
ttttcatctttagatgagaacttgcttcatcaagtggaatctcacgcagaaccatttgcg
ggacttgacccagaagacctcctgcaggagggtctcctcccccagtttgatgaatcacca
tttggacaagataattcaaatcatgttttagatcatgaccttgatcgccagttcacttcg
catctcatggcgaggccttctgacatggctcagactcagctgcaatatcaggctcggggc
tggccttccccactgcctaacagccaccaacatgtacccagcagaagtcacctatgttta
cagcgacagcctccatcttccaagaagagtgatggctctgggacatacagtaggctgcag
aatacccaggtgagggtcatgtctgagaagaagccaagaaagaaggcagaatcggaaagc
aagcaagaaaaggctaatcgtataatatcggaggccatagccagagccaaggagcgaggg
gagcgcaatattccacgagtgatgagccctgagaacttccctagctcttcagtcgatggg
aaggaagaaaagagagcgcagagggtgaagtctaagccaaaagacagagacaacagaaaa
ccaaaagcgtgttcgaagttgaaagagaagacaaaaattggcaaactcatcattacactg
ggtaagaaccacaagagaaggagcgagtcttccgatgagctgtccgatgccgagcagatg
ccccagcacacattcaaggagcagcactctcaaaaaagaagatcaaatcgacaagttaaa
aggaaaaagtatgcagaagatgcagaaggaaggcagtgtgaggaagaggtgagaggcagc
ctgaaagtgaagaggacctcggctcctccacccggagagcagcctctccagttatttgtg
gaaaatccaagcgaagaagatgctgcaattgtagacaaaatactagcttgtaggactgtg
aaaaaggaggtatcacctggagttatgcttgatatagaagaattttttgtaaagtacaaa
aattactcttatctgcactgtgaatgggccacggaacagcaacttttgaaagataaaagg
atccagcagaaaatcaagagattcaagctaagacaagcacagagggcacattttttggca
gacatggaagaagaaccctttaatccagactacgttgaagtagacagaatattggaagtt
tctttttgtgaagataaggatactggtgagtctgttgtttactacttggtaaagtggtgt
tcgctgccttatgaagatagcacctgggaattaaaagaagatgtagatcttgcaaaaatt
gaagagtttgaacaactgcaagcttcaaggcctgacacaagacaattggatcgtcctccc
tctaatatttggaagaaaatagatcaatccagggaatataaaaatggtaatcaactcagg
gaatatcaactagaaggactcaactggctcttgttcaattggtataatagacgaaactgc
attttagcagatgaaatgggtcttggaaaaaccattcagtcaattaccttcctctacgaa
gtcctcctgactggtatacgagggcctttcctgattatcgcaccgctttccaccattgca
aactgggaaagagaattccgaacatggaccgatattaatgttgtcgtttatcatgggagc
ctgattagcagacagatgatacagcaatacgagatgtacttcagggattctcaggggcgc
atcattcgaggagcatatcgattccaagccataatcactacctttgaaatgattcttggg
ggctgtggagaacttaatgcaattgaatggcgatgcgtgattattgatgaagcacacagg
ttaaaaaataaaaattgtaaactcctggaaggtttgaagctcatgaatctggaacacaag
gtgctcttgactggcactcctctccaaaatacagtggaggaactgttcagccttcttcac
tttctcgaacccttaaggtttccatctgaatcaaccttcatgcaagagtttggagatctg
aagacagaggagcaggttcagaaacttcaggctatccttaaaccgatgatgctgagacga
ctgaaagaagacgtggagaagagattggccccgaaggaagagactattattgaagtagag
ctgaccaacattcaaaagaaatactacagggctattttagagaagaacttctcgtttcta
tccaaaggagctggacaaactaatgtacctaacttggtcaataccatgatggagctcagg
aaatgctgcaatcacccgtatcttatcaaaggtgctgaggagaaaataattggagaattt
agagacacatacaatccatctgcctctgattttcatctgcaagcaatgatccaatctgct
ggtaaattggtcctcattgataagttacttcccaaaatgaaagctggaggtcataaagtg
ctcatcttctctcagatggttcgctgccttgacatcctggaagactaccttatccataaa
agatatttatatgagcggattgacggtagagtcagaggaaatcttcgacaagcagctata
gatcgatttagtaagcctgattcagatcgatttgttttcctcctgtgcacccgagctggt
ggtctgggcatcaacttaactgcagctgatacgtgcataatttttgattctgattggaat
cctcaaaatgacctccaggctcaagctcgttgccacaggattggtcagaacaaagcagtt
aaagtctacagattagtgactcgtaactcctatgagagagagatgtttgaccgagccagc
ttgaaactgggcctcgataaagctgtgttgcagagcatgagcggaagagacagtaatgtc
agtggtattcagcagctttccaaaaaagaaatagaagacctgcttcgaagaggggcgtat
ggtgccattatggaggaggaagatgaaggctctaagttctgtgaagaagacatcgaccag
attctgcttcgccgaacaaaaactattacaatcgaatcagaaggatgcgggtccacattt
gctaaggcaagctttgtagcatctggaaaccggacagatatttccttagatgatcccaac
ttctggcaaaaatgggctaaaaaagcagaactagatctagatgccatcagtggcagaaac
agtttggttattgataccccaagaattaggaagcaaaccagaccctttagtgccacaaaa
gacgaattggctgaattgtctgaagctgagagtgaaggagaagaaaaacccaaactccgg
agaccctgtgaccggtccggtggctacggaaggacagagtgcttcagagtggagaaaaac
ctgctggtttatgggtggggccgatggagagaaatcctgtctcacggccgttttaagcgg
cagctgaatgagcacgatgtagaagtcatttgccgtgccctcttagcctattgcctcgtt
cactatcggggtgacgagaaaattaaaggtttcatatgggatctcatcactcccactgag
gatggccagactcgtgagctacagaatcacttaggcctctctgctcctgtgccccggggc
cgaaaggggaagaaagtaaagactcagacgagctcctttgatatccagaaggcagagtgg
cttcgcaagtataacccagagcagctcctgcaagatgagggttacaagaagcacgtgaag
caccactgcaacaaagtcctgcttcgtgtaaggatgctgtactatctaaagcaagaagtc
attggaaatgagagtcagaaagtatttgatggagttgatgcaagtgacattgatgtttgg
gtaccagagccagaccattctgaggttcctgctgcgtggtgggactttgatgctgataag
tctcttcttattggtgtttttaagcatggttatgaaaaatataacaccatccgagcagac
ccagcgctctgcttcctggaaagagtgggcaagcccgatgagaaggctgttgctgctgaa
cagagagccaatgactacatggatggggatgtggaagacccagaatacaagccggccccg
gcgatctttaaagatgatatagaggatgacgtttcttccccgggagatctggtcatagca
gatggagagggtcagttgatggaaggggacaaagtgtactggcctaccccatcagctctg
accacacggctgagacgcctcatcactgcgtaccagcgaaccaataaaaacagacacatc
cagcaagcacagccaaccttctcagtgcctgccagtgtcatgcagcctctttatgaagaa
gcagccctgaaccctaaaatggcagccaagatagaaagacagcagagatggacaaggaga
gaagaagctgacttttatagagttgtgtctacatttggagtagtttttgacccagacaga
ggacagtttgattggacaaaattccgagctctggctcggctgcacaagaaaaccgataac
agtctggagaagtacttgtgtgcattcatggccatgtgtcggagggtctgtcgtcttcct
tccaaagaagaattggtcgatccaaatatttttattcaaccaatcacagaagaacgagct
tctaggacattgtatcgcattgaacttcttagaaaagtgcgggagcaggcccttcgccac
ccacagttgtttgaacgcttgaagctttgccatccgaatccagacttacctatctggtgg
gaatgcggctctcatgatagggatttgcttattggtgctgccaaacatggagtcagccgg
accgactatcacattctgcgtgaccctgagctctcatttatggctgctcagaggagctac
agtcagagcaaggtgactcactcaaggacttccaccccactgttacagcaataccaagta
gtactttctgcttctcctcttacctcttcgcctagactgctaggtgctaaagggcctctt
gtagaggacgtgagagttaagagtgaaagccttgcagaagagccccagtcctctgaagaa
gaatctatgtcttctatggaaacaaggacacgagttaaatctgagcctgtaagtccaaag
aacggtgttttatcacaggctcctggagaacagaaatctggtgggaaaagtgaaacagac
agacgcatggttgcagccagaacagaacccctaactccaaatccagcttctaagaaacag
agagtccacaaaagagggtcagaatccagttctgattctgactctgactctgagcgctca
tcgtgttcttccagatcctcctcctcctcttcttcctcctcttgttcacactctcgatca
ggctctagctcttcttcatcctcatcttgttcttcggcatcctcctcttcctcctcatcc
tcctcctcgtcatcatcatcttcttcatcatcatccgaagaaagtgacagtgaagaagag
gtccaaaagcgagaaggtacgcctcacgcgaaagcctatgacgaggaaagtgtcgcgtca
ctgagcgctacccaggacgaaacccaggacggaacccaggacagcttccaggcaagcaat
ggagcaccagagtccgcgcacttgttacagggcggatatatgctggcagcctcatactgg
ccgaaggaccgggtaatgatcaaccgcttggacagtatttgtcaaacagttctgaaaggg
aagtggccgtcagctagaagacattatgatgctaacacagtggcgtctttctataccaca
aaactgctggacagtcccggagcagctacagaatacagcgagcccagtgtccccacgccc
ccagctgtggctgtcaaagaagagcatgaacagtcaccacagatgtcaaaggtgaagaag
catgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaagttgaca
tttcagaagcagggacttgcccagaaaaggccgtttgatggtgaagatggtgccgtgggc
cagcagcagtgcctcccccggcctcgggagctgcagagcacatcggagaccagcgttgtg
aacacctccaagtctatcccagcatcaggttcttccattcagtcaacccttggtgccaat
ggagcaatactagacagccagcctatagtgaagaaaaggcggggaaggaggaggaatgta
gaaggtgctgacatcctctttctgaacagaaataagccacctaatcatatttccacaggg
atgaatccagcactgtcctatcctcagcctcaaagaattcctgatacagaaagtcctgtt
ccagttattaacctcaaagatgggacacggctcgcaggagatgacgcaccgaagagaaag
gacctggacagatggcttaaggagcaccccggttacgtggaggacttaggagcttttatt
ccaagagtgcagcttcacgagggaagacccaagcagaaaaggcatcggtgccgaaacccg
aacaaactagacgtcaacagcctcactggagaggagcgagtgcagctgatcaacagaagg
aacgcaagaaaggttggaggtgcatttgctcctcctctgaaagatttatgtagattcctg
aaagaaaattcagaatatggagtagctcctgagtggggagatgttgttaagcagtccggg
tttcttccagaaagtatgtatgaacgtattctcactggtcctgttgtgagagaggaagtg
agcaggcgggggagaaggcctaaaagtggagttcccaaggctaccatagcagcagcggct
cctggcagcagtggaccaggcaatcctttgctggccaatggattacttccaggcgtggat
ctcacagctctgcaggccttacaacaaaatctgcagaacctgcagtcgctgcacgtgact
gcggggctgatgggcatgcctgctggcctttcttctggaggagaagctaaaaccatggct
gctatgtttcccatgctgttctcaggaatggccgggttaccaaatctgctaggcatggga
ggactcctgtcaaagactgcagaatctggggctgaaggaaaaaaaggaaatgactctaag
gagctagaaggaaaaaaagaaaggacagagagccaaagtccggagaacggaggagaacgc
tgtgtgccaggttctccttcgacttcctccacggctgcagctaccaagcccttagctctt
aacccactgttgctgtccaacatgctttacccagggatgctgctcacgccaggccttaat
cttcatcttcccgccttgtctcagtccaatactttcgatgtacagaaaaacaagagcagt
gacttagagtcatctaagtcagtcgaaataaaggaagaagattccagaggtagagatcag
gaagagaaagggggaactgagcctagtcctctcaacgagaacagcacagacgagggttca
gagagagcctcctccgggtccgatagttcatcatcgtcatctgaggattcagactcaagc
aatgaagactga
DBGET
integrated database retrieval system
