Rattus norvegicus (rat): 307927
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Entry
307927 CDS
T01003
Symbol
Taf5l1
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
307927 (Taf5l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
307927 (Taf5l1)
03036 Chromosome and associated proteins [BR:
rno03036
]
307927 (Taf5l1)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
307927 (Taf5l1)
Coactivators
SAGA/TFTC/STAGA complex
307927 (Taf5l1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
307927 (Taf5l1)
STAGA complex
307927 (Taf5l1)
TFTC complex
307927 (Taf5l1)
SAGA complex
307927 (Taf5l1)
SLIK complex
307927 (Taf5l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_SPT8
RMC1_N
Beta-prop_EIPR1
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_WDR19_1st
WD40_like
PROPPIN
Beta-prop_IP5PC_F
Ge1_WD40
WD_LRWD1
Nbas_N
Motif
Other DBs
NCBI-GeneID:
307927
NCBI-ProteinID:
NP_001100912
RGD:
1310215
Ensembl:
ENSRNOG00000018027
UniProt:
B1H284
A6KJ00
LinkDB
All DBs
Position
19:complement(68889153..68908480)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQVQVAVSCYLKRRQYVDSEGPLKQGLRLSQTPEEMAANLTVQSESGCANAVSA
APCQAEPQQYEVQFGRLRNFLTDSDSQYSHEVMPLLYPLFVYLHLNLVQSGPKSTVESFY
SRFHGMFLQNASQKDIIEQLQTTQTIQDILSNFQLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRSESSSLEPPDVPNPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHCVDTSRVRLACDTLEEEESEDDDVGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR
STCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagtgcgcacggagcaggttcaggtggcagtgtcctgctacctcaaacgccgg
cagtacgtggactcagaaggccctttgaagcaaggcctgagactctcacagacccctgag
gagatggcggccaacctcacagtccaatcagaatctggttgtgccaatgcggtgtctgca
gccccttgccaggcagaaccccagcaatatgaagtacagtttggacgactgaggaacttt
ctcactgattctgactcccagtacagccatgaagttatgcctctcctctaccctctcttt
gtctacctccacctcaacctggtccagagtggccccaagagcaccgtggaaagcttctat
agccgcttccatggaatgttcctgcagaatgcaagtcagaaggacatcatcgagcaactg
cagaccacgcagaccatccaggatattctgtcaaacttccagcttcgtgcattcctggac
aacaagtatgtggtccgtctccaggaagatagctacaactaccttatccgctacctccaa
agcgacaacaacactgccctgtgcaaggtgctcgccgtgcacattcacttggacgtgcag
cctgctaagaggacagactaccagctgtatgccagtggtggctcctcccgcagtgaaagc
agcagcctggagccaccagatgtgcccaaccctatcctgcagaacgaggctgccctggag
gtcttgcaggagagtatcaagcgggtcaaggatggacctccctccctcaccaccatctgc
ttctacgccttctataacacagagcagctgctgaataccgcagagatctcctctgacagc
aaactgctggctgctgggtttgacaactcctgcataaagctctggagcttgcggtccaaa
aaactgaagtcagagccccactgtgtggacacatcccgtgtccggctggcttgtgacact
ctggaggaggaggagagcgaagacgatgacgtaggcacggaaatgaagattctgcgggga
cactgtggcccagtgtatagcacacggttcctcgcggacagctcagggctgctctcttgt
tctgaagatatgtccatcaggtactgggacctggggagcttcaccaacactgtgctgtat
cagggacatgcctaccctgtgtgggacgtggacatcagcccctacagcctgtactttgcc
agtgggtcccatgaccgtaccgccaggctgtggtcttttgatcggacgtacccgctgagg
atatatgcggggcacctggcagatgtggactgtgtcaaattccaccccaactcaaactac
ttagctactggctccactgacaaaactgttcgtctatggagtgcccagcaggggaactca
gtgcggctttttacaggtcaccgaggccccgtgctctccctctccttttctcccaatggt
aagtacttggcatctgctggtgaggaccagcggttaaagttgtgggacttggcctctggg
acactttttaaagaactgagaggccacacggacagcatcaccagtctggcctttagcccg
gacagcggtctgattgcttctgcctccatggacaactctgtacgcgtctgggacatcaga
agcacgtgctgcaacacaccagctgacggctcttctggggagcttgtgggcgtgtacact
gggcagatgagcaacgtcctgagtgtacagttcatggcctgcaacctcctcctagtgact
ggaatcacacaagagaatcaagaacattaa
DBGET
integrated database retrieval system
